Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10521176	0.85[EUR][1000 genomes]
rs11076579	0.95[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs11076581	0.95[CEU][hapmap]
rs11076584	0.85[EUR][1000 genomes]
rs11076585	0.85[EUR][1000 genomes]
rs11639986	0.85[EUR][1000 genomes]
rs11640180	0.85[EUR][1000 genomes]
rs11644191	0.95[CEU][hapmap]
rs11646615	0.85[EUR][1000 genomes]
rs11860514	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs11861584	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs11861659	0.95[CEU][hapmap]
rs11866605	0.84[EUR][1000 genomes]
rs12445445	0.90[CEU][hapmap]
rs12448845	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs13339037	0.85[EUR][1000 genomes]
rs13339075	0.85[EUR][1000 genomes]
rs28477531	0.89[EUR][1000 genomes]
rs28664163	0.85[EUR][1000 genomes]
rs9745667	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833220	chr16:48747177-48899984	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11861256	DCP1B	trans	parietal	SCAN
rs11861256	CYLD	cis	parietal	SCAN
rs11861256	DNAJA2	cis	parietal	SCAN
rs11861256	DNAJA2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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