Variant report

Variant	rs11864949
Chromosome Location	chr16:76373252-76373253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:76373071..76375700-chr16:76381006..76383022,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11861029	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861873	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11864590	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11864760	1.00[AMR][1000 genomes]
rs55954470	1.00[AMR][1000 genomes]
rs56099821	1.00[AMR][1000 genomes]
rs56162176	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56908627	1.00[AMR][1000 genomes]
rs57473201	1.00[AMR][1000 genomes]
rs57849035	1.00[AMR][1000 genomes]
rs58741496	1.00[AMR][1000 genomes]
rs6564316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6564317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6564319	1.00[AMR][1000 genomes]
rs6564321	1.00[AMR][1000 genomes]
rs73619239	1.00[AMR][1000 genomes]
rs73619250	1.00[AMR][1000 genomes]
rs73619300	1.00[AMR][1000 genomes]
rs73619302	1.00[AMR][1000 genomes]
rs73620917	1.00[AMR][1000 genomes]
rs73620946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024929	1.00[AMR][1000 genomes]
rs74024930	1.00[AMR][1000 genomes]
rs74024937	1.00[AMR][1000 genomes]
rs74024938	1.00[AMR][1000 genomes]
rs74024960	1.00[AMR][1000 genomes]
rs74024967	1.00[AMR][1000 genomes]
rs74024969	1.00[AMR][1000 genomes]
rs74024974	1.00[AMR][1000 genomes]
rs74024976	1.00[AMR][1000 genomes]
rs74024979	1.00[AMR][1000 genomes]
rs74024995	1.00[AMR][1000 genomes]
rs74026725	1.00[AMR][1000 genomes]
rs74026731	1.00[AMR][1000 genomes]
rs74026733	1.00[AMR][1000 genomes]
rs74026735	1.00[AMR][1000 genomes]
rs74026738	1.00[AMR][1000 genomes]
rs74026741	1.00[AMR][1000 genomes]
rs74026754	1.00[AMR][1000 genomes]
rs74026780	1.00[AMR][1000 genomes]
rs74026781	1.00[AMR][1000 genomes]
rs8058106	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058357	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1059162	chr16:75929348-76730816	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv572995	chr16:75935025-76708417	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv572996	chr16:75935025-76735249	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv817220	chr16:75939705-76735383	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1056021	chr16:75955522-76729765	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv542962	chr16:75955522-76729765	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv906935	chr16:76031737-76453110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv906936	chr16:76031737-76768178	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv817549	chr16:76067068-76582099	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1065644	chr16:76166579-76475634	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv869200	chr16:76227867-76695732	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv833286	chr16:76243730-76444283	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	esv2763142	chr16:76271660-76461841	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76369800-76376800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr16:76370000-76378800	Weak transcription	Brain Hippocampus Middle	brain
3	chr16:76370000-76378800	Weak transcription	Brain Substantia Nigra	brain
4	chr16:76370000-76379000	Weak transcription	Brain Anterior Caudate	brain
5	chr16:76372800-76373800	Weak transcription	Brain Angular Gyrus	brain
6	chr16:76373000-76373400	Enhancers	Brain Germinal Matrix	brain

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