Variant report

Variant	rs11864965
Chromosome Location	chr16:82910550-82910551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82862726..82865339-chr16:82908462..82910658,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11864015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102684	1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs16958785	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs16958788	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16958794	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16958804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958823	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2549138	1.00[JPT][hapmap]
rs2615129	1.00[JPT][hapmap]
rs286679	1.00[JPT][hapmap]
rs4082277	1.00[JPT][hapmap]
rs4783281	1.00[JPT][hapmap]
rs8063818	1.00[JPT][hapmap]
rs8064047	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv573382	chr16:82905546-82950502	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82886200-82917000	Weak transcription	Right Ventricle	heart
2	chr16:82905600-82921000	Weak transcription	Fetal Muscle Leg	muscle
3	chr16:82905800-82924800	Weak transcription	HSMM	muscle
4	chr16:82905800-82925200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:82908600-82912400	Weak transcription	Colon Smooth Muscle	Colon
6	chr16:82908800-82910800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr16:82908800-82911800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr16:82908800-82912200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:82908800-82912200	Weak transcription	Psoas Muscle	Psoas
10	chr16:82908800-82914000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr16:82908800-82915000	Weak transcription	Left Ventricle	heart
12	chr16:82908800-82915000	Weak transcription	Right Atrium	heart
13	chr16:82908800-82922000	Weak transcription	Aorta	Aorta
14	chr16:82909000-82915000	Weak transcription	Fetal Brain Male	brain
15	chr16:82909400-82915200	Weak transcription	HUVEC	blood vessel
16	chr16:82909800-82921600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:82910200-82910600	Enhancers	Fetal Heart	heart
18	chr16:82910400-82911000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr16:82910400-82911000	Enhancers	HSMMtube	muscle
20	chr16:82910400-82932600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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