Variant report

Variant	rs11867416
Chromosome Location	chr17:60207668-60207669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:60206361..60208277-chr17:61077957..61079671,2	MCF-7	breast:
2	chr17:60206348..60208717-chr20:62295151..62298472,15	MCF-7	breast:
3	chr17:60206341..60208334-chr20:45785735..45787914,2	MCF-7	breast:
4	chr17:60207320..60208851-chr20:49272837..49273529,7	MCF-7	breast:
5	chr17:60206656..60210214-chr17:60214708..60217345,4	MCF-7	breast:
6	chr17:60206431..60208369-chr20:49271849..49274876,4	MCF-7	breast:
7	chr17:60206381..60207994-chr20:55678659..55681123,2	MCF-7	breast:
8	chr17:60187813..60190725-chr17:60206302..60210046,4	MCF-7	breast:
9	chr17:59980466..59981970-chr17:60206996..60209828,2	MCF-7	breast:
10	chr17:60140866..60143825-chr17:60205682..60208418,2	K562	blood:
11	chr17:60207371..60208475-chr20:49272944..49273891,3	MCF-7	breast:
12	chr17:60207401..60207920-chr20:62296743..62297257,2	MCF-7	breast:
13	chr17:60206428..60208403-chr20:62296420..62298171,2	MCF-7	breast:
14	chr17:60142325..60144913-chr17:60205682..60208299,2	K562	blood:
15	chr17:60206902..60210217-chr17:60211586..60217357,14	MCF-7	breast:
16	chr17:59939687..59942526-chr17:60206367..60208624,3	MCF-7	breast:
17	chr17:60207390..60207903-chr20:62296806..62297371,2	MCF-7	breast:
18	chr17:60207373..60208153-chr20:62296416..62297211,2	MCF-7	breast:
19	chr17:60206671..60208291-chr20:49271983..49274962,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108510	Chromatin interaction
ENSG00000231078	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000258366	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12449546	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12450586	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12937135	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12938238	0.94[EUR][1000 genomes]
rs12940263	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12941451	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12942668	0.84[EUR][1000 genomes]
rs12943549	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12945310	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12946816	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12947100	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12947777	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12951752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17544195	0.94[EUR][1000 genomes]
rs1988667	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35426361	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62070710	0.94[EUR][1000 genomes]
rs62070711	0.99[EUR][1000 genomes]
rs62070714	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv833507	chr17:60174659-60369541	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv469887	chr17:60176679-60381899	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv482579	chr17:60176679-60381899	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv575844	chr17:60199130-60434267	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1055856	chr17:60202722-60408137	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv543401	chr17:60202722-60408137	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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