Variant report

Variant	rs11868979
Chromosome Location	chr17:63566778-63566779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11656254	1.00[ASN][1000 genomes]
rs1859452	1.00[ASN][1000 genomes]
rs1859453	1.00[ASN][1000 genomes]
rs2007085	1.00[ASN][1000 genomes]
rs2107652	1.00[ASN][1000 genomes]
rs4790929	1.00[ASN][1000 genomes]
rs9910026	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058285	chr17:63541178-63591627	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1060940	chr17:63559234-64433942	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv543406	chr17:63559234-64433942	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63558400-63566800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:63558400-63569400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:63558600-63566800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr17:63561000-63568200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:63561600-63568400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:63561800-63568000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:63561800-63579800	Weak transcription	Right Atrium	heart
8	chr17:63562800-63568200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:63564600-63566800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr17:63564800-63566800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr17:63564800-63568800	Weak transcription	Fetal Intestine Large	intestine
12	chr17:63565600-63568400	Weak transcription	HepG2	liver
13	chr17:63565800-63570800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr17:63566000-63570000	Weak transcription	Spleen	Spleen
15	chr17:63566400-63569200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr17:63566600-63567000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr17:63566600-63568400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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