Variant report

Variant	rs11871738
Chromosome Location	chr17:17525243-17525244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11650499	0.97[ASN][1000 genomes]
rs11869600	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12449964	0.82[CEU][hapmap]
rs12936587	0.82[CEU][hapmap]
rs12937108	0.88[ASW][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12937187	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12939297	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939598	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12941217	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12942708	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12943416	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12945496	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12946063	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12946845	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12947517	0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12949039	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12949336	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12950093	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12951181	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12951347	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12952281	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12952629	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34664666	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35372447	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35660942	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35851484	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58251514	0.89[EUR][1000 genomes]
rs62066210	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9911672	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17517200-17529400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:17524400-17525800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr17:17524600-17525800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr17:17524800-17525400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:17524800-17525400	Enhancers	Spleen	Spleen
6	chr17:17524800-17525600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:17524800-17526200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr17:17525000-17525800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:17525200-17525400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr17:17525200-17525400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:17525200-17525400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:17525200-17525600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:17525200-17525800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr17:17525200-17525800	Enhancers	Fetal Thymus	thymus
15	chr17:17525200-17527200	Enhancers	Primary monocytes fromperipheralblood	blood

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