Variant report

Variant	rs11872324
Chromosome Location	chr18:29826587-29826588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10502584	0.86[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs10502586	0.91[ASW][hapmap];1.00[CEU][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11081754	1.00[EUR][1000 genomes]
rs11660358	0.93[EUR][1000 genomes]
rs11662069	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17743148	1.00[CEU][hapmap];0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7233697	0.86[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29821200-29832400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:29822200-29831400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:29822400-29831200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr18:29822600-29831200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:29823800-29831200	Weak transcription	Pancreas	Pancrea
6	chr18:29823800-29831400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:29823800-29848000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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