Variant report

Variant	rs11873476
Chromosome Location	chr18:9839851-9839852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9838309..9840508-chr18:9845163..9848337,3	K562	blood:
2	chr18:9837938..9840066-chr18:9840233..9841907,2	K562	blood:
3	chr18:9825919..9829366-chr18:9837136..9840599,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3786424	1.00[EUR][1000 genomes]
rs72477243	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv833586	chr18:9783830-9971693	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9825400-9849800	Weak transcription	Gastric	stomach
2	chr18:9828400-9846000	Weak transcription	Pancreas	Pancrea
3	chr18:9829000-9841600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr18:9829000-9845200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:9829000-9848200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr18:9829600-9846600	Weak transcription	NHDF-Ad	bronchial
7	chr18:9831200-9847200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr18:9831600-9852400	Weak transcription	A549	lung
9	chr18:9831800-9845200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr18:9832400-9846600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr18:9832800-9845000	Weak transcription	Osteobl	bone
12	chr18:9832800-9865000	Weak transcription	Spleen	Spleen
13	chr18:9833000-9846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr18:9833200-9842200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr18:9834600-9847400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr18:9835000-9840200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr18:9836000-9840000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr18:9836200-9846000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:9836200-9846800	Weak transcription	HMEC	breast
20	chr18:9836200-9848200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr18:9836800-9846400	Weak transcription	Fetal Intestine Small	intestine
22	chr18:9836800-9860400	Weak transcription	Brain Hippocampus Middle	brain
23	chr18:9837000-9841600	Weak transcription	K562	blood
24	chr18:9837000-9844200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr18:9837000-9846200	Weak transcription	Fetal Thymus	thymus
26	chr18:9837200-9841000	Strong transcription	Hela-S3	cervix
27	chr18:9837800-9840000	Enhancers	Colon Smooth Muscle	Colon
28	chr18:9837800-9840200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr18:9837800-9840200	Enhancers	Fetal Heart	heart
30	chr18:9837800-9841000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr18:9837800-9842800	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr18:9838000-9840000	Enhancers	Psoas Muscle	Psoas
33	chr18:9838000-9840200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr18:9838000-9840200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr18:9838000-9840200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr18:9838000-9840200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr18:9838000-9840200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr18:9838000-9840400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr18:9838000-9840400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr18:9838000-9840600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr18:9838000-9840600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr18:9838200-9840000	Enhancers	Right Ventricle	heart
43	chr18:9838200-9840200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr18:9838200-9840200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr18:9838200-9840200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr18:9838200-9840200	Enhancers	Left Ventricle	heart
47	chr18:9838200-9840400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr18:9838200-9840600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr18:9838200-9840600	Enhancers	Fetal Muscle Trunk	muscle
50	chr18:9838600-9841600	Weak transcription	Primary B cells from peripheral blood	blood

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