Variant report

Variant	rs11876458
Chromosome Location	chr18:39289536-39289537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11873827	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11877516	0.82[EUR][1000 genomes]
rs11877563	0.82[EUR][1000 genomes]
rs1368834	0.82[EUR][1000 genomes]
rs1368835	0.99[ASN][1000 genomes]
rs1433931	0.91[ASN][1000 genomes]
rs16975163	0.82[ASN][1000 genomes]
rs16975181	0.87[ASN][1000 genomes]
rs16975197	0.91[ASN][1000 genomes]
rs16975208	0.91[ASN][1000 genomes]
rs2314979	0.99[ASN][1000 genomes]
rs2872802	0.91[ASN][1000 genomes]
rs4890212	0.98[ASN][1000 genomes]
rs4890354	0.91[ASN][1000 genomes]
rs57308985	0.92[EUR][1000 genomes]
rs6507431	0.83[EUR][1000 genomes]
rs6650668	0.82[EUR][1000 genomes]
rs7234764	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7240040	0.99[ASN][1000 genomes]
rs8083506	0.84[EUR][1000 genomes]
rs8084369	0.89[ASN][1000 genomes]
rs8085338	0.82[EUR][1000 genomes]
rs8090195	0.90[ASN][1000 genomes]
rs8099746	0.84[EUR][1000 genomes]
rs9304252	0.99[ASN][1000 genomes]
rs9635939	0.88[ASN][1000 genomes]
rs9635940	0.91[ASN][1000 genomes]
rs9952822	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv431979	chr18:39255558-39696452	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv909565	chr18:39257639-39298357	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39284000-39294400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:39285200-39294000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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