Variant report

Variant	rs11876641
Chromosome Location	chr18:14920039-14920040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11875543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11878098	0.85[AMR][1000 genomes]
rs17842642	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57761867	1.00[AMR][1000 genomes]
rs58758384	0.85[AMR][1000 genomes]
rs786054	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv960218	chr18:14897850-14928912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv576542	chr18:14913292-14978677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760487	chr18:14916966-14927873	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14916400-14925200	Weak transcription	Spleen	Spleen
2	chr18:14918200-14928400	Weak transcription	Aorta	Aorta
3	chr18:14918800-14920600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr18:14918800-14921000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr18:14919000-14920200	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr18:14919000-14920600	Enhancers	HepG2	liver
7	chr18:14919000-14921000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:14919400-14922200	Enhancers	Liver	Liver
9	chr18:14919600-14921200	Weak transcription	Colonic Mucosa	Colon
10	chr18:14919800-14920200	Enhancers	Pancreas	Pancrea
11	chr18:14920000-14920200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:14920000-14920200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr18:14920000-14920200	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr18:14920000-14922200	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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