Variant report

Variant	rs11878240
Chromosome Location	chr19:36711991-36711992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36711582..36712244-chr8:25118983..25119572,2	MCF-7	breast:
2	chr19:36703714..36707271-chr19:36711666..36715110,4	MCF-7	breast:
3	chr19:36711072..36713184-chr19:36713372..36715798,2	K562	blood:
4	chr19:36705207..36708225-chr19:36708519..36712657,6	K562	blood:

Variant related genes	Relation type
ENSG00000196357	Chromatin interaction
ENSG00000167635	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10405434	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10415692	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10418472	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10419778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10419962	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425424	1.00[AMR][1000 genomes]
rs11882807	1.00[AMR][1000 genomes]
rs12104412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13345802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56214452	1.00[AMR][1000 genomes]
rs57994318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61326559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612167	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36706800-36716400	Weak transcription	Aorta	Aorta
2	chr19:36707000-36712800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:36707000-36712800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr19:36707000-36716200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr19:36707000-36726800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr19:36707200-36712600	Weak transcription	NHDF-Ad	bronchial
7	chr19:36707400-36730200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:36707600-36712400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr19:36707600-36712800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr19:36707600-36713000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:36707600-36731800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:36707800-36712000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:36707800-36712400	Weak transcription	Small Intestine	intestine
14	chr19:36707800-36712800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr19:36707800-36712800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr19:36707800-36712800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr19:36707800-36713000	Weak transcription	Brain Anterior Caudate	brain
18	chr19:36707800-36716400	Weak transcription	Right Ventricle	heart
19	chr19:36707800-36717000	Weak transcription	HSMMtube	muscle
20	chr19:36708000-36712800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr19:36708000-36712800	Weak transcription	Ovary	ovary
22	chr19:36708000-36713200	Weak transcription	Gastric	stomach
23	chr19:36708000-36714000	Genic enhancers	Dnd41	blood
24	chr19:36708000-36715000	Weak transcription	NHLF	lung
25	chr19:36708000-36716400	Weak transcription	Psoas Muscle	Psoas
26	chr19:36708000-36716800	Weak transcription	Pancreas	Pancrea
27	chr19:36708000-36719800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr19:36708200-36715000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr19:36708200-36730800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr19:36708400-36712000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr19:36708400-36713800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr19:36708400-36715400	Weak transcription	Fetal Heart	heart
33	chr19:36708400-36716400	Weak transcription	Spleen	Spleen
34	chr19:36708600-36712800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr19:36708800-36712800	Weak transcription	Right Atrium	heart
36	chr19:36709000-36715400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr19:36709000-36723000	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr19:36709000-36723800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr19:36709000-36724000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr19:36709200-36716000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr19:36709200-36716000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr19:36709400-36715200	Strong transcription	Fetal Lung	lung
43	chr19:36709400-36723800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr19:36709600-36713200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr19:36709600-36713200	Strong transcription	Fetal Brain Female	brain
46	chr19:36709800-36712000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr19:36709800-36714000	Strong transcription	Placenta	Placenta
48	chr19:36710000-36712000	Strong transcription	Liver	Liver
49	chr19:36710000-36712800	Strong transcription	Left Ventricle	heart
50	chr19:36710000-36713200	Strong transcription	Duodenum Mucosa	Duodenum

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