Variant report

Variant	rs11879163
Chromosome Location	chr19:38271618-38271619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38083338..38085691-chr19:38270478..38272116,2	K562	blood:
2	chr19:38084603..38087452-chr19:38269351..38271925,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171817	Chromatin interaction
ENSG00000180479	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11881806	1.00[AMR][1000 genomes]
rs11882550	1.00[EUR][1000 genomes]
rs73932926	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv960835	chr19:38270238-38293706	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38269600-38271800	Active TSS	K562	blood
2	chr19:38269600-38272000	Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr19:38270600-38272200	Weak transcription	Lung	lung
4	chr19:38270800-38271800	Flanking Active TSS	Dnd41	blood
5	chr19:38270800-38272200	Weak transcription	Fetal Intestine Small	intestine
6	chr19:38270800-38272400	Weak transcription	Left Ventricle	heart
7	chr19:38270800-38272400	Weak transcription	Pancreas	Pancrea
8	chr19:38270800-38272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr19:38270800-38274400	Weak transcription	Psoas Muscle	Psoas
10	chr19:38270800-38276400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr19:38270800-38277600	Weak transcription	Ovary	ovary
12	chr19:38270800-38277800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:38270800-38279800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr19:38270800-38281000	Weak transcription	Right Ventricle	heart
15	chr19:38270800-38281400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:38271000-38271800	Enhancers	Fetal Brain Female	brain
17	chr19:38271000-38273400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr19:38271000-38275200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr19:38271000-38281000	Weak transcription	Brain Hippocampus Middle	brain
20	chr19:38271200-38271800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr19:38271200-38272400	Weak transcription	Adipose Nuclei	Adipose
22	chr19:38271200-38272800	Weak transcription	Primary T cells from cord blood	blood
23	chr19:38271200-38274600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr19:38271400-38272200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:38271400-38272200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:38271400-38272600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr19:38271400-38275400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr19:38271400-38276600	Weak transcription	Fetal Lung	lung
29	chr19:38271400-38281000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr19:38271600-38272200	Weak transcription	Liver	Liver

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