Variant report

Variant	rs11880443
Chromosome Location	chr19:51110910-51110911
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:51108915..51112953-chr19:51162682..51166555,5	K562	blood:
2	chr19:51103570..51107800-chr19:51108221..51112163,4	K562	blood:
3	chr19:51109906..51112856-chr19:51294280..51296293,2	K562	blood:
4	chr19:51110056..51112953-chr19:51162682..51165400,3	K562	blood:
5	chr19:51109418..51112998-chr19:51159027..51162201,6	K562	blood:
6	chr19:51109418..51112978-chr19:51159521..51162574,6	K562	blood:

Variant related genes	Relation type
ENSG00000235034	Chromatin interaction
ENSG00000161681	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11879649	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11882253	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35616404	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060760	chr19:50883425-51463712	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv1058177	chr19:50984774-51463712	Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1062281	chr19:51053340-51230844	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1062548	chr19:51081358-51230844	Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1065222	chr19:51084705-51136844	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv16242	chr19:51106142-51111826	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3374132	chr19:51108440-51113138	Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv828581	chr19:51109572-51124716	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv961234	chr19:51109635-51126366	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv33810	chr19:51110251-51124545	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51109800-51111000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51110600-51111000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:51110600-51111000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
4	chr19:51110600-51111000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
5	chr19:51110600-51111000	Enhancers	K562	blood
6	chr19:51110600-51111200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
7	chr19:51110600-51111200	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr19:51110600-51111200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
9	chr19:51110600-51111800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
10	chr19:51110600-51112000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr19:51110600-51112000	ZNF genes & repeats	Spleen	Spleen
12	chr19:51110800-51111000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:51110800-51111000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:51110800-51111000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr19:51110800-51111000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr19:51110800-51111000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr19:51110800-51111000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
18	chr19:51110800-51111000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:51110800-51111000	Enhancers	Fetal Brain Male	brain
20	chr19:51110800-51111000	Bivalent Enhancer	Left Ventricle	heart
21	chr19:51110800-51111200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:51110800-51111200	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr19:51110800-51111200	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr19:51110800-51111200	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr19:51110800-51111200	Bivalent Enhancer	Fetal Heart	heart
26	chr19:51110800-51111400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
27	chr19:51110800-51111400	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr19:51110800-51111400	Bivalent Enhancer	Colonic Mucosa	Colon
29	chr19:51110800-51111400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
30	chr19:51110800-51111600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
31	chr19:51110800-51111600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:51110800-51111800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
33	chr19:51110800-51111800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr19:51110800-51111800	Bivalent Enhancer	Fetal Muscle Leg	muscle
35	chr19:51110800-51111800	Active TSS	A549	lung
36	chr19:51110800-51112000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr19:51110800-51112000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr19:51110800-51112000	Enhancers	Primary B cells from peripheral blood	blood
39	chr19:51110800-51112000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr19:51110800-51112200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links