Variant report

Variant	rs1188135
Chromosome Location	chr14:56437386-56437387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1188136	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1188137	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1188138	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1188140	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1188141	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1188142	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1188144	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1188145	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1188149	0.85[AMR][1000 genomes]
rs1471547	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1188135	PSMC6	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56431000-56438800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:56431200-56440800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:56432800-56440000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:56435600-56438400	Weak transcription	Right Atrium	heart
5	chr14:56435800-56438800	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:56435800-56441000	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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