Variant report

Variant	rs11881403
Chromosome Location	chr19:18477814-18477815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:18450112..18452941-chr19:18476056..18478522,2	MCF-7	breast:
2	chr19:18303113..18305996-chr19:18476559..18478748,2	K562	blood:
3	chr19:18470204..18480928-chr19:18494320..18503112,19	MCF-7	breast:
4	chr19:18389083..18394452-chr19:18473748..18478250,14	K562	blood:
5	chr19:18387500..18394364-chr19:18474382..18480258,16	K562	blood:
6	chr19:18476548..18479482-chr19:18491318..18493921,2	K562	blood:
7	chr19:18471150..18480020-chr19:18495501..18504468,30	K562	blood:
8	chr19:18477604..18479658-chr19:18483724..18485879,2	MCF-7	breast:
9	chr19:18313809..18315689-chr19:18476849..18479596,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000130517	Chromatin interaction
ENSG00000105649	Chromatin interaction
ENSG00000264175	Chromatin interaction
ENSG00000268650	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000130513	Chromatin interaction
ENSG00000267959	Chromatin interaction
ENSG00000254858	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1055150	0.83[EUR][1000 genomes]
rs3787023	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532614	chr19:18033043-18573963	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
2	nsv916325	chr19:18244780-18534927	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
3	esv3323899	chr19:18343484-18620429	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	162 gene(s)	inside rSNPs	diseases
4	nsv911274	chr19:18440942-18691942	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1057795	chr19:18453362-18883844	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv543925	chr19:18453362-18883844	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
7	nsv428018	chr19:18454891-18663981	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18452400-18484800	Weak transcription	Right Atrium	heart
2	chr19:18452600-18484400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr19:18452800-18484600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr19:18468400-18478200	Strong transcription	Thymus	Thymus
5	chr19:18468600-18479600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr19:18468600-18484600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr19:18468800-18479400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:18469000-18484200	Weak transcription	Primary B cells from cord blood	blood
9	chr19:18469000-18484600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:18470200-18484400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:18471200-18481200	Enhancers	Placenta	Placenta
12	chr19:18473000-18484400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr19:18473000-18484800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr19:18473200-18484400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr19:18474000-18478400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr19:18474400-18483600	Weak transcription	Gastric	stomach
17	chr19:18474600-18484400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr19:18474800-18480200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:18474800-18484400	Weak transcription	Brain Angular Gyrus	brain
20	chr19:18474800-18484400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr19:18474800-18484800	Weak transcription	Brain Anterior Caudate	brain
22	chr19:18475600-18479600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr19:18475600-18484400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr19:18475600-18484600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:18475800-18482200	Weak transcription	Brain Germinal Matrix	brain
26	chr19:18475800-18484600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr19:18476000-18484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr19:18476200-18478000	Genic enhancers	K562	blood
29	chr19:18476200-18479200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:18476200-18479200	Weak transcription	Fetal Kidney	kidney
31	chr19:18476200-18479400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr19:18476200-18479600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr19:18476200-18479800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr19:18476200-18483400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr19:18476600-18478400	Enhancers	Lung	lung
36	chr19:18476600-18484400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:18476600-18484400	Weak transcription	Small Intestine	intestine
38	chr19:18476600-18484600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr19:18476600-18484800	Weak transcription	Liver	Liver
40	chr19:18476800-18478000	Enhancers	Hela-S3	cervix
41	chr19:18476800-18479400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr19:18476800-18479400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr19:18476800-18484400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr19:18476800-18484400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr19:18476800-18484400	Weak transcription	HSMMtube	muscle
46	chr19:18476800-18484600	Weak transcription	Aorta	Aorta
47	chr19:18476800-18484600	Weak transcription	Right Ventricle	heart
48	chr19:18476800-18484800	Weak transcription	Fetal Lung	lung
49	chr19:18477000-18478000	Weak transcription	Left Ventricle	heart
50	chr19:18477000-18478600	Strong transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links