Variant report

Variant	rs11881428
Chromosome Location	chr19:36507319-36507320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:36507160-36507355	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36505412..36512625-chr19:36513263..36519988,12	K562	blood:
2	chr19:36506976..36509848-chr19:36525241..36526846,2	K562	blood:
3	chr19:36497884..36507784-chr19:36542079..36547610,17	MCF-7	breast:
4	chr19:36484302..36487799-chr19:36505417..36507868,3	K562	blood:
5	chr19:36502189..36508386-chr19:36540645..36546835,9	MCF-7	breast:
6	chr19:36507173..36509172-chr19:36603738..36605911,2	MCF-7	breast:

No data

Variant related genes	Relation type
ALKBH6	TF binding region
ENSG00000248101	TF binding region
ENSG00000105270	Chromatin interaction
ENSG00000205138	Chromatin interaction
ENSG00000161277	Chromatin interaction
ENSG00000105258	Chromatin interaction
ENSG00000105254	Chromatin interaction
ENSG00000075702	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10412081	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57255566	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58991245	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73607766	0.92[EUR][1000 genomes]
rs73607778	0.92[EUR][1000 genomes]
rs8112690	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv911641	chr19:36473677-36536938	Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	esv1000212	chr19:36494643-36508508	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36505600-36521000	Weak transcription	Fetal Brain Male	brain
2	chr19:36505800-36507600	Weak transcription	Adipose Nuclei	Adipose
3	chr19:36505800-36507600	Weak transcription	Brain Substantia Nigra	brain
4	chr19:36505800-36507600	Weak transcription	Right Ventricle	heart
5	chr19:36505800-36508000	Weak transcription	Placenta	Placenta
6	chr19:36505800-36508200	Weak transcription	Lung	lung
7	chr19:36505800-36508800	Weak transcription	Fetal Lung	lung
8	chr19:36505800-36510000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr19:36505800-36511600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr19:36505800-36513200	Weak transcription	Gastric	stomach
11	chr19:36505800-36514800	Weak transcription	NHDF-Ad	bronchial
12	chr19:36505800-36522000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr19:36505800-36522200	Weak transcription	Fetal Kidney	kidney
14	chr19:36505800-36522800	Weak transcription	Small Intestine	intestine
15	chr19:36506000-36507600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr19:36506000-36507600	Weak transcription	Colon Smooth Muscle	Colon
17	chr19:36506000-36507600	Weak transcription	Fetal Intestine Large	intestine
18	chr19:36506000-36507600	Weak transcription	Spleen	Spleen
19	chr19:36506000-36507800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:36506000-36507800	Weak transcription	Colonic Mucosa	Colon
21	chr19:36506000-36507800	Weak transcription	Fetal Intestine Small	intestine
22	chr19:36506000-36507800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr19:36506000-36508000	Weak transcription	Thymus	Thymus
24	chr19:36506000-36508400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr19:36506000-36508600	Weak transcription	Esophagus	oesophagus
26	chr19:36506000-36509200	Weak transcription	Fetal Heart	heart
27	chr19:36506000-36513800	Weak transcription	Primary B cells from cord blood	blood
28	chr19:36506000-36513800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr19:36506000-36514000	Weak transcription	Pancreas	Pancrea
30	chr19:36506000-36514200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr19:36506000-36514400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr19:36506000-36522400	Weak transcription	NH-A	brain
33	chr19:36506000-36522800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr19:36506000-36523000	Weak transcription	HSMM	muscle
35	chr19:36506000-36523200	Weak transcription	Left Ventricle	heart
36	chr19:36506000-36523600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr19:36506200-36507400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr19:36506200-36507600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr19:36506200-36507600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr19:36506200-36507800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr19:36506200-36508200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr19:36506200-36508400	Weak transcription	Primary T cells from cord blood	blood
43	chr19:36506200-36510600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr19:36506200-36510600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr19:36506200-36511000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr19:36506200-36511000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr19:36506200-36511600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr19:36506200-36511800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr19:36506200-36511800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr19:36506200-36512000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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