Variant report

Variant	rs11881628
Chromosome Location	chr19:44999725-44999726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44997908..45002641-chr19:45002925..45005659,8	MCF-7	breast:
2	chr19:44993270..44996512-chr19:44998152..45001010,3	MCF-7	breast:
3	chr19:44999410..45002615-chr19:45002996..45005888,4	K562	blood:

Variant related genes	Relation type
ENSG00000167384	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12611267	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2020083	0.85[ASN][1000 genomes]
rs2293164	0.85[ASN][1000 genomes]
rs2571108	0.93[ASN][1000 genomes]
rs2571109	0.93[ASN][1000 genomes]
rs2686759	0.82[ASN][1000 genomes]
rs3745146	0.87[ASN][1000 genomes]
rs3745147	0.87[ASN][1000 genomes]
rs4141695	0.85[ASN][1000 genomes]
rs8104374	0.89[ASN][1000 genomes]
rs954313	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912112	chr19:44853707-45011727	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv912114	chr19:44858776-45002563	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1061350	chr19:44869075-45035469	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44978800-45003400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr19:44993600-45002000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:44993600-45002000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
4	chr19:44993600-45003600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:44993600-45003600	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr19:44993600-45003600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr19:44993600-45003600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:44994000-45000000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:44994000-45000000	ZNF genes & repeats	Fetal Kidney	kidney
10	chr19:44994000-45001800	ZNF genes & repeats	Dnd41	blood
11	chr19:44994000-45002200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
12	chr19:44994000-45002200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
13	chr19:44994000-45002600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr19:44994000-45002600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
15	chr19:44994000-45002800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
16	chr19:44994000-45002800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr19:44994000-45002800	ZNF genes & repeats	Brain Anterior Caudate	brain
18	chr19:44994000-45002800	ZNF genes & repeats	HepG2	liver
19	chr19:44994000-45003000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
20	chr19:44994000-45003000	ZNF genes & repeats	Fetal Brain Female	brain
21	chr19:44994000-45003000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr19:44994000-45003200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr19:44994000-45003200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
24	chr19:44994000-45003200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:44994000-45003200	ZNF genes & repeats	Liver	Liver
26	chr19:44994000-45003400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr19:44994000-45003400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr19:44994000-45003400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
29	chr19:44994000-45003600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr19:44994000-45003600	ZNF genes & repeats	GM12878-XiMat	blood
31	chr19:44994000-45003800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:44994000-45003800	ZNF genes & repeats	Brain Germinal Matrix	brain
33	chr19:44994200-45000200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
34	chr19:44994200-45000200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
35	chr19:44994200-45000400	ZNF genes & repeats	Left Ventricle	heart
36	chr19:44994200-45000800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:44994200-45001200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
38	chr19:44994200-45001200	ZNF genes & repeats	Primary T cells from cord blood	blood
39	chr19:44994200-45002000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr19:44994200-45002200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr19:44994200-45002600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
42	chr19:44994200-45002600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
43	chr19:44994200-45002800	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr19:44994200-45002800	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr19:44994200-45003000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr19:44994200-45003000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
47	chr19:44994200-45003000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
48	chr19:44994200-45003000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
49	chr19:44994200-45003000	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr19:44994200-45003000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

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