Variant report

Variant	rs11881771
Chromosome Location	chr19:42061556-42061557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16975329	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs16975336	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs16975348	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs62119364	0.89[EUR][1000 genomes]
rs62119366	0.89[EUR][1000 genomes]
rs62119367	0.89[EUR][1000 genomes]
rs62119368	0.89[EUR][1000 genomes]
rs62119370	0.89[EUR][1000 genomes]
rs62119371	0.89[EUR][1000 genomes]
rs62119372	0.89[EUR][1000 genomes]
rs62119373	0.89[EUR][1000 genomes]
rs62119374	0.89[EUR][1000 genomes]
rs62119376	0.89[EUR][1000 genomes]
rs62119408	0.89[EUR][1000 genomes]
rs62119409	0.89[EUR][1000 genomes]
rs62119410	0.89[EUR][1000 genomes]
rs62119416	0.89[EUR][1000 genomes]
rs62119418	0.89[EUR][1000 genomes]
rs62119419	1.00[EUR][1000 genomes]
rs62119420	1.00[EUR][1000 genomes]
rs62119421	1.00[EUR][1000 genomes]
rs62119449	1.00[EUR][1000 genomes]
rs62119450	1.00[EUR][1000 genomes]
rs62119452	0.87[EUR][1000 genomes]
rs7246864	1.00[EUR][1000 genomes]
rs7255763	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7255775	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7260464	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9749229	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911770	chr19:41962486-42066279	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv911772	chr19:41985624-42066279	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv911773	chr19:42001210-42085873	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv978751	chr19:42036596-42073874	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv579603	chr19:42058025-42062131	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	lncRNA	n/a	inside rSNPs	diseases
10	nsv442463	chr19:42059846-42062303	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv579604	chr19:42059850-42061940	Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	lncRNA	n/a	inside rSNPs	diseases
12	nsv579605	chr19:42059850-42062077	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases
13	nsv579606	chr19:42059850-42062131	Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases
14	nsv579607	chr19:42059850-42062184	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription	lncRNA	n/a	inside rSNPs	diseases
15	nsv579608	chr19:42060151-42062131	Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
16	nsv579609	chr19:42060455-42062131	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	lncRNA	n/a	inside rSNPs	diseases
17	nsv579610	chr19:42061367-42062077	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases
18	nsv579611	chr19:42061367-42062131	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases
19	nsv579612	chr19:42061367-42062184	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	lncRNA	n/a	inside rSNPs	diseases
20	nsv579613	chr19:42061429-42062131	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	lncRNA	n/a	inside rSNPs	diseases
21	nsv579614	chr19:42061429-42062184	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42058000-42069600	Weak transcription	Pancreas	Pancrea
2	chr19:42059000-42061800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr19:42059200-42062000	Weak transcription	Spleen	Spleen
4	chr19:42059200-42063200	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr19:42059600-42061800	Weak transcription	Fetal Thymus	thymus
6	chr19:42059800-42061800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:42059800-42064600	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr19:42060600-42061800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr19:42060600-42062600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr19:42060800-42061800	Enhancers	GM12878-XiMat	blood
11	chr19:42060800-42062000	Active TSS	Primary T cells fromperipheralblood	blood
12	chr19:42060800-42062000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr19:42060800-42063800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:42061000-42061600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr19:42061000-42062000	Enhancers	HUVEC	blood vessel
16	chr19:42061000-42062400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr19:42061000-42062800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:42061200-42061600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr19:42061200-42061600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr19:42061200-42061600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr19:42061200-42061800	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr19:42061200-42062000	Enhancers	Dnd41	blood
23	chr19:42061200-42062200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr19:42061200-42062600	Enhancers	Thymus	Thymus
25	chr19:42061400-42061600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr19:42061400-42061600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr19:42061400-42061800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr19:42061400-42062000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr19:42061400-42062400	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr19:42061400-42062400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr19:42061400-42062600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr19:42061400-42062600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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