Variant report

Variant	rs11882566
Chromosome Location	chr19:51918475-51918476
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:51915676-51919084	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:51841483..51843929-chr19:51917621..51920239,2	K562	blood:
2	chr19:51870023..51872431-chr19:51915719..51918606,3	K562	blood:
3	chr19:51914793..51918628-chr19:51919138..51922351,5	K562	blood:

Variant related genes	Relation type
ENSG00000255441	TF binding region
ENSG00000269403	Chromatin interaction
ENSG00000160318	Chromatin interaction
ENSG00000255441	Chromatin interaction
ENSG00000186806	Chromatin interaction
ENSG00000142512	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10409027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51912200-51921000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:51912400-51919400	Weak transcription	K562	blood
3	chr19:51912600-51920600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:51913000-51920400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr19:51913200-51919400	Weak transcription	GM12878-XiMat	blood
6	chr19:51913400-51919200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr19:51913400-51919400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr19:51913600-51920400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:51913800-51924600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:51914000-51918800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr19:51915000-51919600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:51916000-51918600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr19:51916400-51918800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr19:51916600-51918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:51916600-51918800	Strong transcription	Spleen	Spleen
16	chr19:51916800-51918600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr19:51917800-51919200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:51917800-51919800	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr19:51918000-51918600	Enhancers	Fetal Muscle Trunk	muscle
20	chr19:51918000-51919200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr19:51918000-51919400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr19:51918000-51920600	Weak transcription	Fetal Intestine Small	intestine
23	chr19:51918200-51919200	Weak transcription	Primary B cells from cord blood	blood

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