Variant report

Variant	rs11882930
Chromosome Location	chr19:55826868-55826869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:55826023..55828833-chr19:55849119..55851596,2	K562	blood:
2	chr19:55822070..55823832-chr19:55824905..55827613,2	K562	blood:
3	chr19:55826026..55829339-chr19:55863511..55866069,3	K562	blood:
4	chr19:55826008..55829754-chr19:55831479..55834187,3	MCF-7	breast:
5	chr19:55807914..55809958-chr19:55826283..55828071,2	K562	blood:
6	chr19:55817013..55819818-chr19:55824816..55827807,2	MCF-7	breast:
7	chr19:55790019..55792790-chr19:55826113..55827832,2	K562	blood:

Variant related genes	Relation type
ENSG00000133247	Chromatin interaction
ENSG00000180061	Chromatin interaction
ENSG00000267531	Chromatin interaction
ENSG00000133265	Chromatin interaction
ENSG00000160471	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10401201	1.00[ASN][1000 genomes]
rs10411773	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10412726	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10420693	1.00[ASN][1000 genomes]
rs10425848	0.97[ASN][1000 genomes]
rs11084393	0.87[ASN][1000 genomes]
rs1109368	1.00[ASN][1000 genomes]
rs11668309	0.97[ASN][1000 genomes]
rs11668344	0.97[ASN][1000 genomes]
rs1172821	0.95[ASN][1000 genomes]
rs1172822	1.00[ASN][1000 genomes]
rs2384686	0.97[ASN][1000 genomes]
rs2384687	1.00[ASN][1000 genomes]
rs2384688	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384689	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384690	1.00[ASN][1000 genomes]
rs2384691	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875253	1.00[ASN][1000 genomes]
rs34962991	1.00[ASN][1000 genomes]
rs35515212	1.00[ASN][1000 genomes]
rs4806659	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4806660	1.00[ASN][1000 genomes]
rs4806661	1.00[ASN][1000 genomes]
rs7246479	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs734518	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7508682	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8107664	0.87[ASN][1000 genomes]
rs897796	1.00[ASN][1000 genomes]
rs897797	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs897798	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1065760	chr19:55721521-55929740	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
3	nsv912455	chr19:55725410-55879872	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv912456	chr19:55725410-55925500	Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
5	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
6	nsv912459	chr19:55791380-55845386	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
8	nsv912460	chr19:55814881-55897327	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55813200-55827600	Weak transcription	Lung	lung
2	chr19:55813600-55827400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr19:55813600-55850000	Weak transcription	Right Atrium	heart
4	chr19:55813800-55827600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr19:55814000-55827600	Weak transcription	A549	lung
6	chr19:55814400-55831400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr19:55818200-55827400	Weak transcription	Aorta	Aorta
8	chr19:55818200-55832400	Weak transcription	Colonic Mucosa	Colon
9	chr19:55818400-55831000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr19:55818600-55831200	Weak transcription	Right Ventricle	heart
11	chr19:55820800-55839000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr19:55821000-55831000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr19:55821000-55831200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr19:55821400-55827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr19:55821400-55827600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr19:55821400-55831000	Weak transcription	Osteobl	bone
17	chr19:55821600-55827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:55821600-55827600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr19:55821800-55829400	Weak transcription	NHLF	lung
20	chr19:55821800-55831000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr19:55821800-55831000	Weak transcription	Fetal Brain Male	brain
22	chr19:55821800-55831200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr19:55822000-55831000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr19:55822000-55831400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr19:55822200-55831000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr19:55822200-55831000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr19:55822200-55831000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr19:55822200-55831000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr19:55822200-55831400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr19:55822200-55831400	Weak transcription	Brain Anterior Caudate	brain
31	chr19:55822200-55831400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr19:55822200-55831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:55822200-55831400	Weak transcription	Brain Substantia Nigra	brain
34	chr19:55823200-55827400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr19:55823200-55831400	Weak transcription	Brain Angular Gyrus	brain
36	chr19:55824000-55832200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr19:55824000-55832400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr19:55824600-55827400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr19:55824600-55827600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr19:55824600-55830800	Weak transcription	Fetal Muscle Leg	muscle
41	chr19:55824600-55831000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr19:55824600-55831400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:55824800-55827200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr19:55824800-55831000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr19:55824800-55831200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr19:55824800-55831400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:55824800-55831400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr19:55824800-55832200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr19:55825000-55827400	Weak transcription	Spleen	Spleen
50	chr19:55825000-55828400	Weak transcription	Brain Germinal Matrix	brain

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