Variant report

Variant	rs11883523
Chromosome Location	chr2:50140955-50140956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10495986	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11889255	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11891368	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11891766	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11902067	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17039371	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17039373	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17039375	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17039417	0.88[EUR][1000 genomes]
rs17437434	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2068489	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60174219	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72884138	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72884139	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72884161	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72884163	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72884167	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72884168	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885826	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885831	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885847	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885848	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885850	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885851	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7558063	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50140600-50141800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:50140800-50141600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:50140800-50142000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:50140800-50142200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:50140800-50142200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:50140800-50142200	Enhancers	HMEC	breast
7	chr2:50140800-50143000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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