Variant report

Variant	rs11883726
Chromosome Location	chr2:56347445-56347446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10171800	0.83[ASN][1000 genomes]
rs10178508	0.94[ASN][1000 genomes]
rs11125616	0.97[ASN][1000 genomes]
rs11883950	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11885285	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11889604	0.91[EUR][1000 genomes]
rs11890186	0.86[EUR][1000 genomes]
rs13001865	0.83[ASN][1000 genomes]
rs1368245	0.93[ASN][1000 genomes]
rs1835895	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2023514	0.83[ASN][1000 genomes]
rs2023515	0.83[ASN][1000 genomes]
rs2099305	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2160706	0.90[ASN][1000 genomes]
rs4380285	0.89[EUR][1000 genomes]
rs6740716	0.91[EUR][1000 genomes]
rs6753053	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9711578	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9751500	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv874162	chr2:56255832-56480571	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34703	chr2:56272949-56382181	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874163	chr2:56280428-56357582	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv874164	chr2:56280428-56388746	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv874165	chr2:56280428-56393918	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv9824	chr2:56282176-56392083	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv874166	chr2:56282762-56370879	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv874167	chr2:56284418-56388746	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv457952	chr2:56292883-56388746	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv582031	chr2:56292883-56388746	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56345000-56347600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr2:56345400-56347600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:56346000-56347600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:56346000-56354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:56346200-56347600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:56346200-56349600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:56346600-56348000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:56346600-56349600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:56346800-56347600	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr2:56347000-56347600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr2:56347000-56347600	Flanking Active TSS	K562	blood
12	chr2:56347000-56347800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr2:56347400-56347600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
14	chr2:56347400-56347600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:56347400-56347600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:56347400-56348200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:56347400-56353600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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