Variant report

Variant	rs11883900
Chromosome Location	chr2:134189289-134189290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LYPD1-1	chr2:134189237-134189388	ENSG00000232474.1

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11886344	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997821	chr2:133868822-134360220	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535927	chr2:133868822-134360220	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1002488	chr2:133890159-134275312	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv535928	chr2:133890159-134275312	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3375790	chr2:133906915-134222833	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134181400-134191000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:134182800-134192600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:134183000-134191000	Weak transcription	NH-A	brain
4	chr2:134184800-134192400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:134185000-134196600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:134187200-134192600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:134187800-134194600	Enhancers	Hela-S3	cervix
8	chr2:134188200-134189400	Enhancers	HMEC	breast
9	chr2:134188200-134189800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:134188400-134189400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:134188400-134189400	Enhancers	NHEK	skin
12	chr2:134188600-134189600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:134188800-134189400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:134188800-134189400	Enhancers	Brain Substantia Nigra	brain
15	chr2:134189000-134190800	Weak transcription	Osteobl	bone
16	chr2:134189000-134191200	Weak transcription	Fetal Kidney	kidney
17	chr2:134189000-134191800	Weak transcription	Stomach Mucosa	stomach
18	chr2:134189200-134190400	Enhancers	A549	lung
19	chr2:134189200-134190600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:134189200-134192600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:134189200-134196600	Weak transcription	Brain Cingulate Gyrus	brain

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