Variant report

Variant	rs11884767
Chromosome Location	chr2:58937463-58937464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10490096	1.00[ASN][1000 genomes]
rs13409201	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550035	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1796434	1.00[ASN][1000 genomes]
rs2192901	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2952664	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715162	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961965	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567466	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58935600-58937800	Enhancers	K562	blood
2	chr2:58936800-58938000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:58936800-58938400	Weak transcription	Right Atrium	heart
4	chr2:58937000-58938000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:58937000-58938000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:58937000-58938800	Enhancers	Fetal Brain Female	brain
7	chr2:58937000-58939200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:58937200-58938800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:58937200-58943800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:58937400-58942600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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