Variant report

Variant	rs11885066
Chromosome Location	chr2:10297305-10297306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10297096..10298028-chr2:10575136..10575688,2	K562	blood:
2	chr2:10295754..10297354-chr2:10298419..10300657,2	K562	blood:
3	chr2:10272153..10274468-chr2:10296810..10299007,2	MCF-7	breast:
4	chr2:10268949..10270497-chr2:10295428..10298201,2	K562	blood:
5	chr2:10296675..10298215-chr2:10573676..10576663,2	K562	blood:
6	chr2:10280945..10282469-chr2:10297115..10299071,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163009	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4669534	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4669536	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4669537	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873634	chr2:10275814-10337034	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10269600-10299400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:10271400-10303800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:10273800-10330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:10274000-10299200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:10276400-10307400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:10276600-10301800	Weak transcription	Osteobl	bone
7	chr2:10277600-10321600	Weak transcription	K562	blood
8	chr2:10278000-10302200	Weak transcription	HSMM	muscle
9	chr2:10278000-10311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:10282200-10316600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:10284400-10299400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:10285000-10299400	Weak transcription	Fetal Lung	lung
13	chr2:10285200-10299800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:10285400-10302000	Weak transcription	HMEC	breast
15	chr2:10285600-10307400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:10285800-10310400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:10286200-10299600	Weak transcription	Brain Germinal Matrix	brain
18	chr2:10286400-10301800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:10286400-10331400	Weak transcription	Spleen	Spleen
20	chr2:10286600-10304000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:10286800-10299400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:10286800-10312400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr2:10287000-10298200	Weak transcription	GM12878-XiMat	blood
24	chr2:10287000-10301800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:10287000-10303800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:10287000-10312000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr2:10288400-10307600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr2:10290200-10298400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr2:10290200-10299200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr2:10290200-10299600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:10290200-10300400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr2:10290200-10351400	Strong transcription	Dnd41	blood
33	chr2:10291600-10298200	Strong transcription	Fetal Thymus	thymus
34	chr2:10292600-10298000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr2:10293000-10307600	Weak transcription	Gastric	stomach
36	chr2:10293400-10302800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr2:10295000-10298600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:10295200-10299000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr2:10295400-10306400	Strong transcription	Thymus	Thymus
40	chr2:10296000-10298400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:10296000-10302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:10296000-10303800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:10296200-10299400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:10296200-10300000	Weak transcription	Fetal Brain Female	brain
45	chr2:10296200-10300600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr2:10296200-10310200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr2:10296200-10314400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr2:10296400-10298600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr2:10296400-10310400	Weak transcription	Hela-S3	cervix
50	chr2:10296400-10312400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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