Variant report

Variant	rs11886050
Chromosome Location	chr2:31257872-31257873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs60562251	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60787090	1.00[EUR][1000 genomes]
rs6706494	1.00[EUR][1000 genomes]
rs6715908	1.00[EUR][1000 genomes]
rs6716034	1.00[EUR][1000 genomes]
rs6726217	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72855277	1.00[EUR][1000 genomes]
rs72855294	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72855299	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72856704	1.00[EUR][1000 genomes]
rs72868752	1.00[EUR][1000 genomes]
rs72868765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570233	1.00[EUR][1000 genomes]
rs7609452	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31246400-31261600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:31251400-31270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:31256200-31258000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr2:31257800-31259600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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