Variant report

Variant	rs11886071
Chromosome Location	chr2:74078416-74078417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74077294..74080205-chr2:74346163..74349130,2	K562	blood:

Variant related genes	Relation type
ENSG00000257800	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10193297	1.00[AMR][1000 genomes]
rs11891435	1.00[AMR][1000 genomes]
rs13384412	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74057000-74093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:74064000-74079200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:74065000-74094400	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:74065600-74094400	Strong transcription	Dnd41	blood
5	chr2:74066200-74083600	Strong transcription	Primary B cells from peripheral blood	blood
6	chr2:74066400-74091600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:74066400-74094400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr2:74066600-74094200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:74066600-74094400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:74066800-74094200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:74067000-74094200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:74068400-74079000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:74068400-74084800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr2:74068600-74094200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:74068800-74094400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr2:74068800-74094400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr2:74069600-74083400	Strong transcription	GM12878-XiMat	blood
18	chr2:74069600-74084200	Weak transcription	Stomach Mucosa	stomach
19	chr2:74070400-74090000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:74070600-74094200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:74070800-74089600	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr2:74070800-74093000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr2:74070800-74094200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:74070800-74094200	Strong transcription	Liver	Liver
25	chr2:74070800-74094400	Strong transcription	Placenta	Placenta
26	chr2:74070800-74094400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr2:74071000-74079200	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr2:74071000-74085200	Strong transcription	Brain Hippocampus Middle	brain
29	chr2:74071000-74094400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:74071200-74081200	Strong transcription	Brain Germinal Matrix	brain
31	chr2:74071200-74083600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:74071200-74093800	Strong transcription	HepG2	liver
33	chr2:74071200-74094200	Strong transcription	Adipose Nuclei	Adipose
34	chr2:74071200-74094200	Strong transcription	Fetal Brain Female	brain
35	chr2:74071200-74094200	Strong transcription	Fetal Thymus	thymus
36	chr2:74071200-74094400	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr2:74071400-74078600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:74071400-74078600	Strong transcription	HSMM	muscle
39	chr2:74071400-74078600	Strong transcription	Osteobl	bone
40	chr2:74071400-74079200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:74071400-74080000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:74071400-74082400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:74071400-74084600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:74071400-74084800	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr2:74071400-74085200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr2:74071400-74094000	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr2:74071400-74094200	Strong transcription	Primary T cells from cord blood	blood
48	chr2:74071600-74079000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:74071600-74084600	Strong transcription	Brain Cingulate Gyrus	brain
50	chr2:74071600-74085000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links