Variant report

Variant	rs11886357
Chromosome Location	chr2:20222990-20222991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20218756..20221372-chr2:20222050..20225276,4	MCF-7	breast:
2	chr2:20215693..20217676-chr2:20220990..20223704,2	MCF-7	breast:
3	chr2:20208645..20229804-chr2:20247969..20254330,37	MCF-7	breast:
4	chr2:20215704..20218308-chr2:20221875..20224870,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11896842	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754905	0.81[ASN][1000 genomes]
rs57945861	0.81[EUR][1000 genomes]
rs73220327	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73220333	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73220335	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73220338	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7558158	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20213000-20227200	Weak transcription	Ovary	ovary
2	chr2:20213200-20225000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:20213200-20227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:20213200-20227000	Weak transcription	Aorta	Aorta
5	chr2:20213400-20227400	Weak transcription	Fetal Kidney	kidney
6	chr2:20213400-20232200	Weak transcription	Right Ventricle	heart
7	chr2:20213600-20227000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:20216400-20227800	Weak transcription	Fetal Intestine Large	intestine
9	chr2:20216400-20228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:20216800-20224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:20219400-20227000	Weak transcription	Left Ventricle	heart
12	chr2:20220400-20223000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:20221000-20223000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
14	chr2:20221200-20227000	Weak transcription	Liver	Liver
15	chr2:20221400-20227000	Weak transcription	A549	lung
16	chr2:20221400-20227200	Weak transcription	Fetal Lung	lung
17	chr2:20221400-20228200	Weak transcription	Fetal Stomach	stomach
18	chr2:20221400-20230000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:20221400-20230000	Weak transcription	Colonic Mucosa	Colon
20	chr2:20221400-20233200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:20221400-20249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:20221600-20224800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:20221600-20227000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:20221600-20227000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:20221600-20227000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:20221600-20227200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:20221600-20228200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr2:20221800-20227000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr2:20222200-20223000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:20222200-20227800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr2:20222200-20229800	Weak transcription	Brain Angular Gyrus	brain
32	chr2:20222400-20223600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:20222400-20231200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr2:20222600-20223000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr2:20222600-20223000	Enhancers	HUVEC	blood vessel
36	chr2:20222600-20223000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr2:20222600-20227000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:20222600-20227000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:20222600-20230000	Weak transcription	Pancreas	Pancrea
40	chr2:20222800-20223400	Weak transcription	Fetal Muscle Leg	muscle
41	chr2:20222800-20223600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr2:20222800-20225000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:20222800-20227000	Weak transcription	Primary T cells from cord blood	blood
44	chr2:20222800-20227000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr2:20222800-20227000	Weak transcription	HSMM	muscle
46	chr2:20222800-20228000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr2:20222800-20233200	Weak transcription	Right Atrium	heart

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