Variant report

Variant	rs11886424
Chromosome Location	chr2:11301581-11301582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11295929..11299678-chr2:11300609..11303606,5	K562	blood:
2	chr2:11301127..11303401-chr2:11313857..11316013,2	MCF-7	breast:
3	chr2:11294400..11297941-chr2:11298345..11302243,10	MCF-7	breast:
4	chr2:11296019..11298621-chr2:11300609..11302864,3	K562	blood:

Variant related genes	Relation type
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4668717	0.81[ASN][1000 genomes]
rs4668718	0.81[ASN][1000 genomes]
rs4669697	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520789	chr2:11259067-11312224	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11329400	Weak transcription	Gastric	stomach
2	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
3	chr2:11296400-11303600	Weak transcription	HSMMtube	muscle
4	chr2:11296400-11306400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:11296400-11307200	Weak transcription	Thymus	Thymus
6	chr2:11296400-11308600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:11296400-11309600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:11296400-11314200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:11296400-11314800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:11296400-11315200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:11296400-11315200	Weak transcription	Brain Substantia Nigra	brain
12	chr2:11296400-11315400	Weak transcription	Brain Angular Gyrus	brain
13	chr2:11296400-11318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:11296600-11301800	Weak transcription	Primary T cells from cord blood	blood
15	chr2:11296600-11303600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr2:11296600-11304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:11296600-11306200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:11296600-11315200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:11296600-11315200	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:11296600-11315200	Weak transcription	NHDF-Ad	bronchial
21	chr2:11296600-11319200	Weak transcription	Fetal Lung	lung
22	chr2:11296800-11303600	Weak transcription	Left Ventricle	heart
23	chr2:11296800-11303800	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:11296800-11304200	Weak transcription	Esophagus	oesophagus
25	chr2:11296800-11307800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:11296800-11308000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr2:11296800-11309200	Weak transcription	Ovary	ovary
28	chr2:11296800-11315000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr2:11296800-11315200	Weak transcription	Brain Anterior Caudate	brain
30	chr2:11296800-11318200	Weak transcription	A549	lung
31	chr2:11296800-11379800	Weak transcription	Small Intestine	intestine
32	chr2:11297000-11301600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:11297000-11303600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr2:11297000-11303800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:11297000-11305200	Weak transcription	Colonic Mucosa	Colon
36	chr2:11297000-11305800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr2:11297200-11303600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:11297600-11315200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:11297600-11394400	Weak transcription	Right Ventricle	heart
40	chr2:11297800-11303600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr2:11297800-11315200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr2:11298200-11315400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr2:11298200-11317600	Weak transcription	Fetal Brain Male	brain
44	chr2:11299000-11304400	Strong transcription	Fetal Stomach	stomach
45	chr2:11299200-11357000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr2:11299400-11308800	Weak transcription	Pancreas	Pancrea
47	chr2:11299600-11308800	Weak transcription	Placenta	Placenta
48	chr2:11299800-11301600	Enhancers	Fetal Muscle Trunk	muscle
49	chr2:11299800-11303800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr2:11300200-11302000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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