Variant report

Variant	rs11886869
Chromosome Location	chr2:36711141-36711142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1179500	0.87[EUR][1000 genomes]
rs11888819	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890094	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893748	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403857	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403858	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403859	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17018901	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021870	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2022210	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770839	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770844	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770845	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3899034	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670562	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60970158	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61077474	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7571231	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571475	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7598753	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs848537	0.83[EUR][1000 genomes]
rs950420	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955601	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv581468	chr2:36687111-36715689	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36687200-36712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:36688600-36725600	Weak transcription	Small Intestine	intestine
3	chr2:36702400-36712000	Genic enhancers	HUVEC	blood vessel
4	chr2:36703200-36712600	Genic enhancers	Osteobl	bone
5	chr2:36703200-36717200	Weak transcription	Brain Substantia Nigra	brain
6	chr2:36703400-36712000	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:36703400-36712800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:36703600-36712400	Genic enhancers	NHDF-Ad	bronchial
9	chr2:36703800-36711600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:36703800-36713400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr2:36704000-36712000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:36704000-36712200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:36704000-36712600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:36704200-36712400	Strong transcription	Fetal Intestine Large	intestine
15	chr2:36704400-36716200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:36704600-36711600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr2:36704600-36713200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:36704800-36736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:36705000-36743200	Weak transcription	Brain Germinal Matrix	brain
20	chr2:36705200-36712000	Genic enhancers	NHLF	lung
21	chr2:36705200-36712200	Genic enhancers	Muscle Satellite Cultured Cells	--
22	chr2:36705200-36712200	Weak transcription	Fetal Brain Male	brain
23	chr2:36705200-36713800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:36705800-36711200	Strong transcription	Ovary	ovary
25	chr2:36706200-36711800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr2:36706400-36712000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:36706600-36711200	Strong transcription	HMEC	breast
28	chr2:36706800-36711400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:36706800-36712600	Weak transcription	Fetal Thymus	thymus
30	chr2:36707000-36711200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:36707000-36712400	Genic enhancers	A549	lung
32	chr2:36707000-36740600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:36707200-36711800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr2:36707200-36713000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:36707400-36712200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:36707400-36712400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr2:36707400-36716400	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:36707600-36712400	Weak transcription	Fetal Kidney	kidney
39	chr2:36707600-36716600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr2:36707600-36717000	Weak transcription	Brain Angular Gyrus	brain
41	chr2:36708000-36712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr2:36708000-36712800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr2:36708600-36713000	Genic enhancers	Placenta	Placenta
44	chr2:36708600-36739000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:36708800-36712000	Genic enhancers	Aorta	Aorta
46	chr2:36708800-36712000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
47	chr2:36708800-36720800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr2:36708800-36726000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr2:36709000-36713000	Genic enhancers	HepG2	liver
50	chr2:36709000-36719600	Weak transcription	Brain Inferior Temporal Lobe	brain

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