Variant report

Variant	rs11886989
Chromosome Location	chr2:235150294-235150295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11887173	1.00[EUR][1000 genomes]
rs6758726	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834572	chr2:235146304-235333842	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235145200-235156000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:235148800-235154400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:235149200-235154200	Enhancers	NH-A	brain
4	chr2:235149400-235150400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:235149400-235150800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:235149400-235151400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:235149400-235151400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:235149400-235151600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:235149400-235151600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:235149400-235151600	Enhancers	HSMM	muscle
11	chr2:235149400-235152000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:235149400-235152400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:235149400-235154400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:235149400-235155400	Enhancers	NHDF-Ad	bronchial
15	chr2:235149400-235171600	Enhancers	HMEC	breast
16	chr2:235149600-235150600	Enhancers	A549	lung
17	chr2:235149600-235150600	Weak transcription	HUVEC	blood vessel
18	chr2:235149600-235151400	Enhancers	HSMMtube	muscle
19	chr2:235149600-235151400	Enhancers	NHLF	lung
20	chr2:235149800-235151200	Flanking Active TSS	NHEK	skin
21	chr2:235149800-235151800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:235149800-235152200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:235150200-235150600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:235150200-235150600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:235150200-235151200	Weak transcription	Fetal Kidney	kidney
26	chr2:235150200-235152400	Enhancers	Osteobl	bone

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