Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10496339	0.83[AFR][1000 genomes]
rs13405175	0.82[EUR][1000 genomes]
rs17023031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17351500	1.00[EUR][1000 genomes]
rs17351577	0.82[EUR][1000 genomes]
rs17436026	1.00[EUR][1000 genomes]
rs17436127	0.82[EUR][1000 genomes]
rs56753682	0.80[AFR][1000 genomes]
rs62147568	0.82[EUR][1000 genomes]
rs62150080	0.93[EUR][1000 genomes]
rs62150082	0.93[EUR][1000 genomes]
rs62150083	0.93[EUR][1000 genomes]
rs62150103	0.82[EUR][1000 genomes]
rs62150104	0.82[EUR][1000 genomes]
rs62150105	0.82[EUR][1000 genomes]
rs62150108	0.82[EUR][1000 genomes]
rs62150114	0.82[EUR][1000 genomes]
rs62150116	0.82[EUR][1000 genomes]
rs6711546	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs940459	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100346200-100379400	Weak transcription	Fetal Lung	lung
2	chr2:100357600-100389400	Weak transcription	Thymus	Thymus
3	chr2:100358400-100375400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr2:100358800-100375600	Strong transcription	Primary B cells from cord blood	blood
5	chr2:100359600-100379200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:100360000-100383400	Weak transcription	Ovary	ovary
7	chr2:100360000-100394600	Weak transcription	Dnd41	blood
8	chr2:100360200-100385200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:100360400-100371200	Weak transcription	Liver	Liver
10	chr2:100365200-100379600	Weak transcription	Primary T cells from cord blood	blood
11	chr2:100367800-100386400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:100369800-100372200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:100370000-100371400	Enhancers	NH-A	brain
14	chr2:100370000-100372000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:100370000-100373600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:100370000-100374600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr2:100370200-100371800	Enhancers	Osteobl	bone
18	chr2:100370400-100371800	Enhancers	NHDF-Ad	bronchial
19	chr2:100370600-100372800	Weak transcription	Spleen	Spleen

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