Variant report

Variant	rs11888340
Chromosome Location	chr2:141540521-141540522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141536035..141538351-chr2:141538844..141542293,3	MCF-7	breast:
2	chr2:141503402..141505492-chr2:141538809..141541757,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1156176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12465494	1.00[CHB][hapmap]
rs12466996	1.00[CHB][hapmap]
rs12467037	1.00[CHB][hapmap]
rs12467677	1.00[CHB][hapmap]
rs12470650	1.00[CHB][hapmap]
rs12472556	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12478219	1.00[CHB][hapmap]
rs1429329	1.00[CHB][hapmap]
rs1429331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2171169	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs288122	1.00[CHB][hapmap]
rs288124	1.00[CHB][hapmap]
rs2890537	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3749010	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs393182	1.00[CHB][hapmap]
rs4954857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4954859	1.00[CHB][hapmap]
rs6758311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7588435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs961910	1.00[CHB][hapmap]
rs982089	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875201	chr2:141448312-141561255	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv875202	chr2:141448312-141587228	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv875203	chr2:141448312-141592252	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875204	chr2:141496596-141592252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv875205	chr2:141500692-141592252	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv875206	chr2:141504719-141571329	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv875207	chr2:141517652-141592252	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141537800-141542000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:141538600-141541600	Weak transcription	Dnd41	blood
3	chr2:141539800-141540600	Enhancers	HUES48 Cell Line	embryonic stem cell

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