Variant report

Variant	rs11889132
Chromosome Location	chr2:21677263-21677264
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11897180	1.00[AMR][1000 genomes]
rs11897921	1.00[AMR][1000 genomes]
rs11898625	1.00[AMR][1000 genomes]
rs60819808	1.00[AMR][1000 genomes]
rs6706688	0.87[AMR][1000 genomes]
rs6714865	0.83[YRI][hapmap]
rs7604351	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21674000-21677400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:21674000-21677400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:21676200-21677400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:21676200-21678400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:21676400-21678000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:21676400-21679200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:21676600-21678000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:21677000-21677400	Enhancers	Rectal Smooth Muscle	rectum
10	chr2:21677000-21677400	Flanking Active TSS	NHLF	lung
11	chr2:21677200-21677400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:21677200-21677400	Enhancers	Fetal Heart	heart
13	chr2:21677200-21677400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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