The 2.0 version of rSNPBase

Variant report

Variant rs11889795
Chromosome Location chr2:55129503-55129504
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55095200-55148200 Weak transcription Primary B cells from peripheral blood blood
2 chr2:55120400-55130200 Weak transcription Hela-S3 cervix
3 chr2:55122000-55130200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr2:55123400-55130800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr2:55125800-55131000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr2:55126000-55130800 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr2:55126000-55131000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr2:55126000-55131200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr2:55126200-55130800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr2:55126600-55129800 Enhancers Fetal Intestine Large intestine
11 chr2:55127000-55130600 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr2:55127000-55132400 Weak transcription Fetal Brain Male brain
13 chr2:55127400-55129600 Enhancers Fetal Intestine Small intestine
14 chr2:55127600-55130400 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr2:55127600-55130600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr2:55127600-55130600 Weak transcription HSMMtube muscle
17 chr2:55127600-55131000 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr2:55127600-55131400 Weak transcription Fetal Thymus thymus
19 chr2:55127600-55133400 Weak transcription Fetal Brain Female brain
20 chr2:55127800-55129600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr2:55127800-55130400 Weak transcription Osteobl bone
22 chr2:55127800-55133400 Weak transcription Brain Substantia Nigra brain
23 chr2:55127800-55133600 Weak transcription Brain Inferior Temporal Lobe brain
24 chr2:55128000-55130000 Weak transcription Muscle Satellite Cultured Cells --
25 chr2:55128000-55130000 Weak transcription NHEK skin
26 chr2:55128000-55130800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr2:55128000-55131000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr2:55128000-55133400 Weak transcription Brain Angular Gyrus brain
29 chr2:55128000-55133400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr2:55128000-55133800 Weak transcription Brain Anterior Caudate brain
31 chr2:55128400-55130800 Weak transcription Small Intestine intestine
32 chr2:55129000-55129800 Enhancers Psoas Muscle Psoas
33 chr2:55129000-55131600 Weak transcription HepG2 liver
34 chr2:55129200-55130200 Weak transcription Duodenum Mucosa Duodenum
35 chr2:55129200-55130600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr2:55129200-55130800 Weak transcription Adipose Nuclei Adipose
37 chr2:55129200-55130800 Weak transcription Liver Liver
38 chr2:55129200-55131000 Weak transcription Fetal Muscle Leg muscle
39 chr2:55129200-55131000 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr2:55129200-55131200 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr2:55129200-55133600 Weak transcription Brain Hippocampus Middle brain
42 chr2:55129400-55129800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr2:55129400-55129800 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015