Variant report

Variant	rs11889870
Chromosome Location	chr2:100532518-100532519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11891106	0.93[AFR][1000 genomes]
rs6717015	0.89[AFR][1000 genomes]
rs6734477	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1003114	chr2:100480432-100601586	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100499200-100533400	Weak transcription	Aorta	Aorta
2	chr2:100515600-100537800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:100517600-100550200	Weak transcription	Primary T cells from cord blood	blood
4	chr2:100518000-100533000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:100518200-100542600	Weak transcription	Fetal Brain Male	brain
6	chr2:100521600-100541800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:100523400-100558200	Weak transcription	Fetal Lung	lung
8	chr2:100528200-100532800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:100528200-100533600	Weak transcription	Right Atrium	heart
10	chr2:100528400-100534800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:100529400-100533800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:100531200-100533000	Weak transcription	Primary B cells from cord blood	blood
13	chr2:100531600-100532600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr2:100532200-100555000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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