Variant report

Variant	rs11890848
Chromosome Location	chr2:151139199-151139200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10930047	1.00[ASN][1000 genomes]
rs12105156	1.00[ASN][1000 genomes]
rs12105546	1.00[ASN][1000 genomes]
rs55752244	1.00[ASN][1000 genomes]
rs56812074	1.00[ASN][1000 genomes]
rs58559187	1.00[ASN][1000 genomes]
rs61440562	1.00[ASN][1000 genomes]
rs73004268	1.00[ASN][1000 genomes]
rs73004270	1.00[ASN][1000 genomes]
rs73004271	1.00[ASN][1000 genomes]
rs73004272	1.00[ASN][1000 genomes]
rs73004273	1.00[ASN][1000 genomes]
rs73004276	1.00[ASN][1000 genomes]
rs73004278	1.00[ASN][1000 genomes]
rs73004279	1.00[ASN][1000 genomes]
rs73004280	1.00[ASN][1000 genomes]
rs73004285	1.00[ASN][1000 genomes]
rs7558183	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151135600-151140000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:151135800-151140200	Enhancers	Adipose Nuclei	Adipose
3	chr2:151135800-151140800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:151136000-151140000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:151136000-151140000	Enhancers	NHDF-Ad	bronchial
6	chr2:151137400-151139400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:151137400-151143000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:151137400-151143000	Weak transcription	Osteobl	bone
9	chr2:151137800-151140000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:151137800-151141000	Enhancers	Fetal Muscle Leg	muscle
11	chr2:151138400-151139200	Enhancers	Psoas Muscle	Psoas
12	chr2:151138400-151139400	Enhancers	NHLF	lung
13	chr2:151138400-151140000	Enhancers	HSMMtube	muscle
14	chr2:151138400-151140600	Enhancers	Liver	Liver
15	chr2:151138600-151139600	Weak transcription	Ovary	ovary
16	chr2:151138600-151139800	Enhancers	Fetal Lung	lung
17	chr2:151138600-151139800	Enhancers	HSMM	muscle
18	chr2:151138800-151139400	Enhancers	Right Atrium	heart
19	chr2:151138800-151139600	Enhancers	Colon Smooth Muscle	Colon
20	chr2:151138800-151140000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:151138800-151143200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:151139000-151140000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:151139000-151143200	Weak transcription	HMEC	breast

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