Variant report

Variant	rs11890958
Chromosome Location	chr2:68156979-68156980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57192446	1.00[EUR][1000 genomes]
rs57818452	1.00[EUR][1000 genomes]
rs733708	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv999943	chr2:67951861-68205615	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009139	chr2:68105679-68188450	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:68149800-68157000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:68153800-68158200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:68154000-68157800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr2:68154000-68158000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:68155200-68157000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:68156000-68157800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:68156000-68158200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:68156200-68157800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:68156200-68157800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:68156200-68158000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:68156200-68158000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:68156400-68157000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:68156400-68157200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:68156400-68157800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:68156600-68157000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:68156600-68157400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:68156800-68157800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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