Variant report

Variant	rs11891373
Chromosome Location	chr2:54667784-54667785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54663522..54666566-chr2:54666978..54670736,4	K562	blood:
2	chr2:54655292..54657691-chr2:54665507..54667789,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11888825	1.00[AFR][1000 genomes]
rs57475830	1.00[AFR][1000 genomes]
rs57877052	1.00[AFR][1000 genomes]
rs59924092	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003205	chr2:54220049-54700843	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2762639	chr2:54220049-54700855	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1011790	chr2:54220049-54714553	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1002891	chr2:54227005-54682169	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv535722	chr2:54227005-54682169	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1011690	chr2:54255361-54700843	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54660200-54668200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:54664800-54668800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:54665000-54668400	Enhancers	Brain Substantia Nigra	brain
4	chr2:54665000-54668600	Enhancers	Adipose Nuclei	Adipose
5	chr2:54665200-54668000	Enhancers	Fetal Lung	lung
6	chr2:54665200-54668400	Enhancers	Brain Hippocampus Middle	brain
7	chr2:54665400-54667800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:54665400-54667800	Enhancers	HepG2	liver
9	chr2:54665400-54668600	Enhancers	Fetal Muscle Leg	muscle
10	chr2:54666000-54667800	Enhancers	Left Ventricle	heart
11	chr2:54666200-54667800	Enhancers	Psoas Muscle	Psoas
12	chr2:54666400-54667800	Enhancers	Right Atrium	heart
13	chr2:54666600-54668200	Enhancers	Primary hematopoietic stem cells	blood
14	chr2:54666600-54668400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr2:54666800-54668000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:54666800-54668200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:54666800-54668400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:54667200-54667800	Enhancers	Brain Cingulate Gyrus	brain
19	chr2:54667200-54668000	Enhancers	Fetal Heart	heart
20	chr2:54667200-54668400	Enhancers	Brain Angular Gyrus	brain
21	chr2:54667200-54668600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:54667200-54668600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:54667200-54668600	Enhancers	Brain Anterior Caudate	brain
24	chr2:54667200-54668800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr2:54667400-54668000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr2:54667600-54668000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:54667600-54668600	Enhancers	HSMMtube	muscle
28	chr2:54667600-54673400	Weak transcription	Lung	lung

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