Variant report

Variant	rs11892278
Chromosome Location	chr2:134531102-134531103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134529817..134532379-chr2:134535821..134537604,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11883512	0.83[AMR][1000 genomes]
rs11888142	0.85[AMR][1000 genomes]
rs58744145	0.83[AMR][1000 genomes]
rs61136240	0.85[AMR][1000 genomes]
rs6713798	0.83[AMR][1000 genomes]
rs6746677	0.83[AMR][1000 genomes]
rs73957204	1.00[AMR][1000 genomes]
rs73957206	1.00[AMR][1000 genomes]
rs73957207	1.00[AMR][1000 genomes]
rs7607368	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134523600-134532400	Weak transcription	Right Ventricle	heart
2	chr2:134524000-134531200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:134524200-134531600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:134524600-134531200	Weak transcription	Brain Substantia Nigra	brain
5	chr2:134524600-134531600	Weak transcription	Fetal Stomach	stomach
6	chr2:134524600-134537200	Weak transcription	NHLF	lung
7	chr2:134524800-134531400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:134524800-134531600	Weak transcription	Left Ventricle	heart
9	chr2:134524800-134531800	Weak transcription	Ovary	ovary
10	chr2:134526200-134531200	Weak transcription	Brain Angular Gyrus	brain
11	chr2:134526400-134531200	Weak transcription	Fetal Heart	heart
12	chr2:134526400-134531400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:134526400-134531600	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:134526600-134531400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:134527000-134532000	Weak transcription	Esophagus	oesophagus
16	chr2:134527000-134532000	Weak transcription	Right Atrium	heart
17	chr2:134530200-134531400	Weak transcription	Adipose Nuclei	Adipose
18	chr2:134530600-134533000	Enhancers	Fetal Lung	lung
19	chr2:134530800-134531800	Enhancers	Brain Hippocampus Middle	brain
20	chr2:134530800-134533200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:134531000-134532200	Enhancers	Brain Anterior Caudate	brain
22	chr2:134531000-134532800	Enhancers	Colon Smooth Muscle	Colon
23	chr2:134531000-134533000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:134531000-134533200	Enhancers	Cortex derived primary cultured neurospheres	brain

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