Variant report

Variant	rs11892326
Chromosome Location	chr2:233609982-233609983
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:233562028..233564475-chr2:233608362..233611915,4	MCF-7	breast:
2	chr2:233604218..233605797-chr2:233609127..233612089,2	K562	blood:
3	chr2:233602602..233605955-chr2:233608656..233612608,7	K562	blood:
4	chr2:233609184..233612039-chr2:233613781..233615296,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204120	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11883794	0.83[AFR][1000 genomes]
rs11890879	0.85[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11897789	0.89[AFR][1000 genomes]
rs11901015	0.85[CEU][hapmap];0.89[YRI][hapmap]
rs2289913	0.85[CEU][hapmap]
rs2293781	0.85[CEU][hapmap]
rs2305138	0.85[CEU][hapmap]
rs3738904	0.85[CEU][hapmap]
rs3817310	0.85[CEU][hapmap]
rs61518838	0.83[AFR][1000 genomes]
rs73102244	0.86[AFR][1000 genomes]
rs7560000	0.85[CEU][hapmap];0.90[YRI][hapmap]
rs7564410	0.85[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs7578385	0.85[CEU][hapmap]
rs7601559	0.82[CEU][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233564200-233613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:233565000-233612200	Weak transcription	Fetal Brain Male	brain
3	chr2:233565600-233641000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:233566800-233612800	Weak transcription	Small Intestine	intestine
5	chr2:233569200-233615000	Weak transcription	Colonic Mucosa	Colon
6	chr2:233569400-233612800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:233569400-233615400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:233571200-233627400	Weak transcription	Gastric	stomach
9	chr2:233571600-233612200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:233585200-233655000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:233585800-233626000	Weak transcription	Fetal Heart	heart
12	chr2:233586400-233612200	Weak transcription	Brain Substantia Nigra	brain
13	chr2:233587000-233630600	Weak transcription	Psoas Muscle	Psoas
14	chr2:233587200-233613200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:233589600-233619800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:233589600-233627000	Weak transcription	Pancreas	Pancrea
17	chr2:233594800-233611800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:233594800-233612400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:233595000-233615600	Weak transcription	Spleen	Spleen
20	chr2:233595200-233612400	Weak transcription	Brain Anterior Caudate	brain
21	chr2:233595400-233612200	Weak transcription	Right Ventricle	heart
22	chr2:233597200-233627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:233599600-233612200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:233599600-233612400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:233599600-233613400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:233600000-233612200	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:233600000-233612400	Weak transcription	Brain Germinal Matrix	brain
28	chr2:233600000-233613800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr2:233600200-233612200	Weak transcription	NH-A	brain
30	chr2:233600600-233613400	Weak transcription	Brain Angular Gyrus	brain
31	chr2:233602000-233612400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:233602000-233612400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:233602000-233612400	Weak transcription	HMEC	breast
34	chr2:233602200-233611800	Weak transcription	NHDF-Ad	bronchial
35	chr2:233602200-233612200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr2:233602200-233612200	Weak transcription	Left Ventricle	heart
37	chr2:233602200-233612400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr2:233602200-233612400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:233602200-233612400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr2:233602200-233613800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr2:233602400-233612000	Weak transcription	NHLF	lung
42	chr2:233602400-233612200	Weak transcription	Osteobl	bone
43	chr2:233602400-233612400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:233602400-233612400	Weak transcription	Brain Hippocampus Middle	brain
45	chr2:233602400-233612400	Weak transcription	K562	blood
46	chr2:233602400-233612600	Weak transcription	NHEK	skin
47	chr2:233602400-233613600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr2:233602400-233616000	Weak transcription	Hela-S3	cervix
49	chr2:233602400-233621800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:233602400-233633200	Weak transcription	Aorta	Aorta

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