The 2.0 version of rSNPBase

Variant report

Variant rs11892354
Chromosome Location chr2:179652513-179652514
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179533600-179669200 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr2:179605400-179662400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr2:179610800-179671400 Weak transcription Ovary ovary
4 chr2:179627000-179655200 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:179627400-179653200 Strong transcription Primary T regulatory cells fromperipheralblood blood
6 chr2:179627600-179652600 Weak transcription Brain Substantia Nigra brain
7 chr2:179627600-179663800 Weak transcription Thymus Thymus
8 chr2:179629600-179666200 Weak transcription GM12878-XiMat blood
9 chr2:179632000-179658800 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr2:179632400-179667800 Weak transcription iPS-15b Cell Line embryonic stem cell
11 chr2:179636200-179660600 Weak transcription Brain Anterior Caudate brain
12 chr2:179639000-179672000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr2:179639400-179671400 Weak transcription Gastric stomach
14 chr2:179642600-179653000 Genic enhancers Skeletal Muscle Male skeletal muscle
15 chr2:179644800-179655400 Weak transcription Primary B cells from peripheral blood blood
16 chr2:179646000-179657600 Weak transcription Primary B cells from cord blood blood
17 chr2:179646000-179684800 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr2:179646400-179659400 Weak transcription H1 Cell Line embryonic stem cell
19 chr2:179647800-179655400 Weak transcription Pancreas Pancrea
20 chr2:179647800-179658800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr2:179647800-179672000 Weak transcription Fetal Thymus thymus
22 chr2:179648400-179667200 Weak transcription HSMM muscle
23 chr2:179649000-179657600 Weak transcription Aorta Aorta
24 chr2:179649200-179655200 Weak transcription H9 Cell Line embryonic stem cell
25 chr2:179649200-179657600 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr2:179650400-179664400 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr2:179650600-179655400 Weak transcription Primary hematopoietic stem cells blood
28 chr2:179650600-179657400 Weak transcription Primary T cells fromperipheralblood blood
29 chr2:179650800-179653000 Genic enhancers Skeletal Muscle Female skeletal muscle
30 chr2:179650800-179657200 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr2:179650800-179657400 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr2:179650800-179662800 Weak transcription Fetal Intestine Large intestine
33 chr2:179651000-179652800 Weak transcription HSMMtube muscle
34 chr2:179651000-179654000 Weak transcription Left Ventricle heart
35 chr2:179651000-179655400 Weak transcription Primary T cells from cord blood blood
36 chr2:179651000-179655400 Weak transcription Psoas Muscle Psoas
37 chr2:179651000-179655800 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr2:179651000-179655800 Weak transcription Fetal Muscle Trunk muscle
39 chr2:179651000-179655800 Weak transcription Fetal Muscle Leg muscle
40 chr2:179651400-179655600 Weak transcription Right Ventricle heart
41 chr2:179652200-179653000 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015