Variant report

Variant	rs11892703
Chromosome Location	chr2:54948356-54948357
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10528	0.85[ASN][1000 genomes]
rs11883962	0.82[AMR][1000 genomes]
rs11902659	0.82[ASN][1000 genomes]
rs12713272	0.82[ASN][1000 genomes]
rs13004944	0.82[ASN][1000 genomes]
rs13408295	0.82[ASN][1000 genomes]
rs17046061	0.82[ASN][1000 genomes]
rs17046067	0.82[ASN][1000 genomes]
rs17046257	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2229503	0.82[ASN][1000 genomes]
rs34311770	0.82[ASN][1000 genomes]
rs35619551	0.82[ASN][1000 genomes]
rs6545435	0.82[ASN][1000 genomes]
rs67246257	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6741053	0.82[ASN][1000 genomes]
rs67514855	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67617923	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72806698	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11892703	EML6	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54945200-54950000	Weak transcription	Right Atrium	heart
2	chr2:54948000-54949800	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links