Variant report

Variant	rs11892943
Chromosome Location	chr2:114735966-114735967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr2:114735172-114736138	HepG2	liver:	n/a	chr2:114735694-114735704
2	CEBPZ	chr2:114735098-114736250	HepG2	liver:	n/a	n/a
3	CEBPB	chr2:114735617-114736040	HepG2	liver:	n/a	chr2:114735799-114735810
4	POLR2A	chr2:114734609-114736884	HepG2	liver:	n/a	n/a
5	TCF7L2	chr2:114735597-114736048	PANC-1	pancreas:	n/a	chr2:114735695-114735704
6	SRF	chr2:114735612-114736112	HepG2	liver:	n/a	n/a
7	YY1	chr2:114735356-114736098	HepG2	liver:	n/a	n/a
8	MYBL2	chr2:114734478-114738477	HepG2	liver:	n/a	n/a
9	CEBPB	chr2:114735042-114736758	HepG2	liver:	n/a	chr2:114735799-114735810
10	TEAD4	chr2:114734792-114736870	HepG2	liver:	n/a	n/a
11	SP1	chr2:114734856-114736305	HepG2	liver:	n/a	n/a
12	FOXA2	chr2:114734545-114736465	HepG2	liver:	n/a	n/a
13	POLR2A	chr2:114734568-114736048	PANC-1	pancreas:	n/a	n/a
14	EP300	chr2:114735612-114736070	SK-N-SH_RA	brain:	n/a	chr2:114735695-114735704
15	CHD2	chr2:114734698-114736606	HepG2	liver:	n/a	n/a
16	HNF4A	chr2:114735100-114736122	HepG2	liver:	n/a	chr2:114735661-114735669 chr2:114735435-114735443
17	MAX	chr2:114735335-114736267	HCT-116	colon:	n/a	chr2:114735696-114735705 chr2:114735695-114735704
18	FOSL2	chr2:114734637-114736836	HepG2	liver:	n/a	chr2:114735695-114735704 chr2:114735694-114735706 chr2:114735697-114735704 chr2:114735971-114735982 chr2:114735696-114735704
19	POLR2A	chr2:114734270-114737182	HepG2	liver:	n/a	n/a
20	POLR2A	chr2:114734593-114736611	HepG2	liver:	n/a	n/a
21	CREB1	chr2:114734601-114737261	HepG2	liver:	n/a	n/a
22	HEY1	chr2:114734625-114737653	HepG2	liver:	n/a	n/a
23	FOSL2	chr2:114734993-114736280	HepG2	liver:	n/a	chr2:114735695-114735704 chr2:114735694-114735706 chr2:114735697-114735704 chr2:114735971-114735982 chr2:114735696-114735704
24	CEBPD	chr2:114735582-114736103	HepG2	liver:	n/a	n/a
25	MYBL2	chr2:114734556-114736571	HepG2	liver:	n/a	n/a
26	POLR2A	chr2:114734646-114736832	HepG2	liver:	n/a	n/a
27	FOXA1	chr2:114734947-114736371	HepG2	liver:	n/a	n/a
28	RXRA	chr2:114735555-114736207	HepG2	liver:	n/a	chr2:114735695-114735704
29	POLR2A	chr2:114734635-114736299	A549	lung:	n/a	n/a
30	REST	chr2:114735611-114736149	HepG2	liver:	n/a	chr2:114736089-114736109 chr2:114735823-114735830
31	JUN	chr2:114735119-114736282	HepG2	liver:	n/a	chr2:114735695-114735704 chr2:114735694-114735706 chr2:114735697-114735704 chr2:114735971-114735982 chr2:114735696-114735704
32	POLR2A	chr2:114735678-114735969	GM12878	blood:	n/a	n/a
33	JUND	chr2:114735036-114736207	HepG2	liver:	n/a	chr2:114735695-114735704 chr2:114735694-114735705 chr2:114735694-114735706 chr2:114735697-114735704 chr2:114735971-114735982 chr2:114735696-114735704
34	FOXA2	chr2:114735076-114736255	HepG2	liver:	n/a	n/a
35	ELF1	chr2:114735600-114736121	HepG2	liver:	n/a	chr2:114735890-114735901
36	CEBPB	chr2:114735023-114736749	HepG2	liver:	n/a	chr2:114735799-114735810
37	TEAD4	chr2:114735523-114735999	HepG2	liver:	n/a	n/a
38	SMC3	chr2:114735005-114736296	HepG2	liver:	n/a	chr2:114735463-114735477
39	USF2	chr2:114734945-114736238	HepG2	liver:	n/a	chr2:114735676-114735692
40	FOXA1	chr2:114734947-114736355	HepG2	liver:	n/a	n/a
41	GATA2	chr2:114735532-114735989	HUVEC	blood vessel:	n/a	chr2:114735731-114735745
42	MYC	chr2:114735296-114736113	HepG2	liver:	n/a	chr2:114735696-114735705 chr2:114735695-114735704
43	SP1	chr2:114735414-114736201	HCT-116	colon:	n/a	n/a
44	TCF12	chr2:114735162-114736221	HepG2	liver:	n/a	chr2:114735602-114735610
45	HNF4A	chr2:114735182-114736142	HepG2	liver:	n/a	chr2:114735661-114735669 chr2:114735435-114735443
46	HDAC2	chr2:114735038-114736260	HepG2	liver:	n/a	chr2:114736071-114736090
47	RAD21	chr2:114735034-114736262	HepG2	liver:	n/a	chr2:114735462-114735481 chr2:114735679-114735692
48	RAD21	chr2:114735049-114736272	HepG2	liver:	n/a	chr2:114735462-114735481 chr2:114735679-114735692
49	POLR2A	chr2:114735818-114736208	GM12891	blood:	n/a	n/a
50	NFIC	chr2:114734581-114736537	HepG2	liver:	n/a	chr2:114735586-114735614 chr2:114736185-114736201

No.	Distal block	Cell Line	Cell type
1	chr2:114727885..114731158-chr2:114732543..114736928,5	K562	blood:
2	chr2:114735300..114736037-chr2:115300297..115300842,2	MCF-7	breast:
3	chr2:114735044..114736090-chr2:115308641..115309989,10	MCF-7	breast:
4	chr2:114648039..114650130-chr2:114735368..114736887,2	K562	blood:
5	chr2:114735196..114736318-chr2:114959110..114959760,3	MCF-7	breast:
6	chr2:114735119..114736107-chr2:115301018..115301565,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTR3-1	chr2:114735195-114737211	NONHSAT073855

Variant related genes	Relation type
ENSG00000234199	TF binding region
ENSG00000243179	TF binding region
ENSG00000115091	Chromatin interaction

rs_ID	r²[population]
rs28618251	1.00[AMR][1000 genomes]
rs57610100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957407	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957418	1.00[AMR][1000 genomes]
rs73957429	1.00[AMR][1000 genomes]

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114705200-114736000	Weak transcription	Gastric	stomach
2	chr2:114705200-114737600	Weak transcription	Esophagus	oesophagus
3	chr2:114713800-114736200	Weak transcription	Fetal Stomach	stomach
4	chr2:114715000-114744000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:114715600-114737000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:114718800-114743200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:114727600-114736400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:114727600-114736800	Weak transcription	A549	lung
9	chr2:114729600-114737000	Weak transcription	Placenta	Placenta
10	chr2:114732400-114737400	Weak transcription	Lung	lung
11	chr2:114733200-114736000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr2:114733400-114737400	Weak transcription	GM12878-XiMat	blood
13	chr2:114733400-114741200	Weak transcription	Liver	Liver
14	chr2:114733400-114743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr2:114733800-114736600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:114733800-114736800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:114733800-114741600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:114734000-114736200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr2:114734000-114736800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr2:114734000-114737200	Enhancers	HMEC	breast
21	chr2:114734000-114737800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:114734000-114738000	Enhancers	Pancreas	Pancrea
23	chr2:114734000-114746000	Weak transcription	Aorta	Aorta
24	chr2:114734000-114751800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:114734200-114736200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:114734200-114736800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:114734200-114737000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr2:114734200-114737800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:114734400-114736600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:114734400-114749800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr2:114734600-114736200	Enhancers	HSMM	muscle
32	chr2:114734600-114736200	Enhancers	HSMMtube	muscle
33	chr2:114734600-114736600	Enhancers	Fetal Intestine Large	intestine
34	chr2:114734600-114736600	Enhancers	NH-A	brain
35	chr2:114734600-114736800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:114734600-114738200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr2:114734800-114736000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr2:114734800-114736000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr2:114734800-114736000	Enhancers	NHEK	skin
40	chr2:114734800-114736200	Enhancers	HUVEC	blood vessel
41	chr2:114734800-114736600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:114734800-114741800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr2:114734800-114742400	Weak transcription	Primary B cells from cord blood	blood
44	chr2:114734800-114744000	Weak transcription	Primary T cells from cord blood	blood
45	chr2:114735000-114736000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:114735000-114736000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:114735000-114736000	Enhancers	NHDF-Ad	bronchial
48	chr2:114735000-114736000	Enhancers	Osteobl	bone
49	chr2:114735000-114736200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:114735000-114736200	Enhancers	Brain Cingulate Gyrus	brain

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