Variant report

Variant	rs11894187
Chromosome Location	chr2:36781708-36781709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:36779682-36783569	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr2:36778965-36784323	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr2:36778885-36782748	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr2:36778021-36782579	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr2:36778770-36782118	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr2:36778760-36784779	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr2:36780515-36782650	PANC-1	pancreas:	n/a	n/a
8	POLR2A	chr2:36781582-36782026	ProgFib	skin:	n/a	n/a
9	BCL3	chr2:36779978-36784433	A549	lung:	n/a	chr2:36780871-36780880 chr2:36782308-36782317
10	POLR2A	chr2:36780183-36787605	A549	lung:	n/a	n/a
11	POLR2A	chr2:36778741-36783444	HepG2	liver:	n/a	n/a
12	POLR2A	chr2:36781708-36781795	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr2:36780142-36782575	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36773463..36777195-chr2:36780018..36782805,3	K562	blood:
2	chr2:36582137..36584136-chr2:36779487..36782117,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000217075	TF binding region
ENSG00000260025	Chromatin interaction
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1110127	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11886145	0.85[ASN][1000 genomes]
rs11899523	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13013664	0.85[ASN][1000 genomes]
rs2276671	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770793	0.88[ASN][1000 genomes]
rs3770796	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770818	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3821150	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7570763	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs848642	0.89[EUR][1000 genomes]
rs848643	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11894187	FEZ2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36713800-36789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36729600-36790200	Weak transcription	Small Intestine	intestine
3	chr2:36750800-36783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:36751000-36824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:36753800-36782600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:36760000-36782000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:36762400-36783200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:36762800-36783800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:36763200-36784200	Strong transcription	HepG2	liver
10	chr2:36763200-36785200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr2:36764000-36790200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:36764200-36783400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:36764200-36783800	Strong transcription	Fetal Intestine Large	intestine
14	chr2:36764400-36787200	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr2:36764800-36791800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:36766000-36791800	Weak transcription	Esophagus	oesophagus
17	chr2:36766400-36788600	Weak transcription	Fetal Brain Male	brain
18	chr2:36766600-36781800	Weak transcription	K562	blood
19	chr2:36766800-36782800	Strong transcription	HMEC	breast
20	chr2:36766800-36783200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:36766800-36783400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:36769200-36782600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:36769800-36790400	Weak transcription	Spleen	Spleen
24	chr2:36770000-36782000	Weak transcription	Colonic Mucosa	Colon
25	chr2:36771000-36789000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:36771200-36788400	Weak transcription	Stomach Mucosa	stomach
27	chr2:36771400-36802800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr2:36771800-36782800	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:36772400-36783800	Strong transcription	Duodenum Mucosa	Duodenum
30	chr2:36772600-36784200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr2:36772600-36784400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:36773000-36811200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:36773600-36782800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:36773800-36782800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:36774200-36782800	Strong transcription	Liver	Liver
36	chr2:36774200-36784000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr2:36774200-36784200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr2:36774400-36789000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr2:36774600-36783200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:36776400-36783200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:36776600-36786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr2:36776600-36792600	Weak transcription	Right Ventricle	heart
43	chr2:36776600-36804800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr2:36776600-36804800	Weak transcription	Fetal Brain Female	brain
45	chr2:36776800-36782800	Strong transcription	Fetal Stomach	stomach
46	chr2:36777400-36786400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr2:36777400-36786600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr2:36777400-36790600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr2:36777400-36795000	Weak transcription	Fetal Heart	heart
50	chr2:36777600-36783800	Strong transcription	Primary T cells fromperipheralblood	blood

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