Variant report

Variant	rs1189458
Chromosome Location	chr13:95825571-95825572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1887163	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2296653	0.96[ASN][1000 genomes]
rs2793821	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs4148493	0.94[ASN][1000 genomes]
rs4148494	0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7330933	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:95756400-95828200	Weak transcription	HSMM	muscle
3	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
4	chr13:95782000-95828000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr13:95787800-95827200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr13:95799200-95833400	Weak transcription	HSMMtube	muscle
7	chr13:95806800-95826800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:95807000-95826800	Weak transcription	NH-A	brain
9	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
10	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
11	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
13	chr13:95807400-95827000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr13:95807400-95828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:95807400-95837800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr13:95807600-95829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:95808200-95826600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr13:95808200-95841800	Weak transcription	Osteobl	bone
19	chr13:95808400-95826200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:95808400-95833400	Weak transcription	Fetal Kidney	kidney
21	chr13:95808400-95854600	Weak transcription	NHEK	skin
22	chr13:95808600-95827200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:95808600-95827200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr13:95809000-95829200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:95810400-95829000	Weak transcription	Adipose Nuclei	Adipose
26	chr13:95810400-95836200	Weak transcription	Fetal Thymus	thymus
27	chr13:95810400-95836400	Weak transcription	Thymus	Thymus
28	chr13:95810800-95826200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:95812400-95831400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr13:95812800-95826800	Weak transcription	Gastric	stomach
31	chr13:95812800-95833400	Weak transcription	Pancreas	Pancrea
32	chr13:95813200-95858000	Weak transcription	Aorta	Aorta
33	chr13:95814200-95828000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr13:95814600-95832400	Weak transcription	HepG2	liver
35	chr13:95814800-95831200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr13:95814800-95833400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr13:95815000-95844200	Weak transcription	Fetal Muscle Leg	muscle
38	chr13:95815200-95847800	Weak transcription	Hela-S3	cervix
39	chr13:95816400-95828000	Weak transcription	Placenta	Placenta
40	chr13:95817000-95830000	Weak transcription	Small Intestine	intestine
41	chr13:95817200-95826600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr13:95817200-95833400	Weak transcription	Psoas Muscle	Psoas
43	chr13:95817400-95828400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr13:95817400-95832800	Weak transcription	Stomach Mucosa	stomach
45	chr13:95817600-95828000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr13:95817800-95826600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr13:95818000-95829200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr13:95818200-95826600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr13:95818200-95841800	Weak transcription	NHDF-Ad	bronchial
50	chr13:95818400-95825600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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