Variant report

Variant	rs11895552
Chromosome Location	chr2:133781957-133781958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10194766	1.00[EUR][1000 genomes]
rs11887257	1.00[TSI][hapmap]
rs11889166	1.00[EUR][1000 genomes]
rs12475072	1.00[TSI][hapmap]
rs13388152	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16842407	1.00[TSI][hapmap]
rs16842532	1.00[TSI][hapmap]
rs16842747	1.00[TSI][hapmap]
rs16857190	1.00[EUR][1000 genomes]
rs16857197	1.00[EUR][1000 genomes]
rs16857260	1.00[EUR][1000 genomes]
rs16857605	1.00[EUR][1000 genomes]
rs16858020	1.00[EUR][1000 genomes]
rs1836220	1.00[EUR][1000 genomes]
rs2069257	1.00[EUR][1000 genomes]
rs2320320	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs56836351	1.00[EUR][1000 genomes]
rs59741799	1.00[EUR][1000 genomes]
rs61257975	1.00[EUR][1000 genomes]
rs6430379	1.00[EUR][1000 genomes]
rs6430393	1.00[EUR][1000 genomes]
rs6713080	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6718899	1.00[EUR][1000 genomes]
rs6719786	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6725275	1.00[EUR][1000 genomes]
rs6732204	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6733114	1.00[EUR][1000 genomes]
rs6738269	1.00[EUR][1000 genomes]
rs6760236	1.00[TSI][hapmap]
rs6761371	1.00[EUR][1000 genomes]
rs72994884	1.00[EUR][1000 genomes]
rs7563261	1.00[EUR][1000 genomes]
rs7568126	1.00[EUR][1000 genomes]
rs7568144	1.00[EUR][1000 genomes]
rs7578857	1.00[EUR][1000 genomes]
rs7579940	1.00[EUR][1000 genomes]
rs7584749	1.00[EUR][1000 genomes]
rs7585734	1.00[EUR][1000 genomes]
rs7608610	1.00[TSI][hapmap]
rs997377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583158	chr2:133316092-133862100	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv916805	chr2:133664765-133924973	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv834381	chr2:133722671-133897994	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834382	chr2:133728399-133891418	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999703	chr2:133734955-133817962	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv535926	chr2:133734955-133817962	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv875139	chr2:133777866-133929225	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:133759800-133784400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:133762600-133797200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:133780200-133783800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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