Variant report

Variant	rs11896639
Chromosome Location	chr2:30584253-30584254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30582322..30584359-chr2:30598766..30601460,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34540361	0.86[EUR][1000 genomes]
rs35857367	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30570200-30584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:30579800-30584600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:30581200-30586000	Enhancers	Fetal Thymus	thymus
4	chr2:30581400-30586000	Enhancers	Placenta	Placenta
5	chr2:30581400-30586200	Enhancers	Left Ventricle	heart
6	chr2:30581400-30586200	Enhancers	Right Ventricle	heart
7	chr2:30581600-30586400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:30581600-30586600	Enhancers	Primary T cells from cord blood	blood
9	chr2:30581800-30586200	Enhancers	Lung	lung
10	chr2:30582000-30586200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:30582000-30586400	Enhancers	Adipose Nuclei	Adipose
12	chr2:30582000-30586400	Enhancers	Fetal Lung	lung
13	chr2:30582000-30591600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:30582400-30585600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:30582400-30586200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr2:30582400-30586200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr2:30582400-30586200	Enhancers	Spleen	Spleen
18	chr2:30582400-30589600	Enhancers	Fetal Heart	heart
19	chr2:30582600-30586000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr2:30582600-30586000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr2:30582600-30586200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr2:30582800-30585600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr2:30583000-30584400	Weak transcription	Osteobl	bone
24	chr2:30583000-30584800	Weak transcription	HSMMtube	muscle
25	chr2:30583000-30585400	Weak transcription	Fetal Intestine Small	intestine
26	chr2:30583000-30585600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr2:30583200-30584400	Weak transcription	Fetal Muscle Leg	muscle
28	chr2:30583200-30584400	Weak transcription	Psoas Muscle	Psoas
29	chr2:30583200-30585200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:30583200-30585400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:30583200-30585400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr2:30583200-30585400	Enhancers	Stomach Smooth Muscle	stomach
33	chr2:30583200-30586000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr2:30583200-30586000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:30583200-30589400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr2:30583200-30591400	Weak transcription	Gastric	stomach
37	chr2:30583400-30584600	Weak transcription	Colon Smooth Muscle	Colon
38	chr2:30583400-30584600	Weak transcription	Ovary	ovary
39	chr2:30583400-30584600	Weak transcription	NH-A	brain
40	chr2:30583400-30584600	Weak transcription	NHLF	lung
41	chr2:30583400-30585200	Weak transcription	Fetal Stomach	stomach
42	chr2:30583600-30585600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:30583800-30584800	Weak transcription	Pancreas	Pancrea
44	chr2:30583800-30585200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:30583800-30585600	Enhancers	Primary B cells from peripheral blood	blood
46	chr2:30583800-30585600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr2:30583800-30586000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:30584000-30584600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr2:30584000-30585000	Weak transcription	Fetal Kidney	kidney
50	chr2:30584000-30585600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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