Variant report

Variant	rs11896718
Chromosome Location	chr2:172419658-172419659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11889130	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889213	0.83[AMR][1000 genomes]
rs16859473	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16859480	1.00[EUR][1000 genomes]
rs16859496	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16859549	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34029335	1.00[EUR][1000 genomes]
rs35421358	1.00[EUR][1000 genomes]
rs4668408	1.00[EUR][1000 genomes]
rs4668409	1.00[EUR][1000 genomes]
rs56188807	1.00[EUR][1000 genomes]
rs57826998	1.00[EUR][1000 genomes]
rs60892098	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172386400-172419800	Weak transcription	Lung	lung
2	chr2:172412600-172420000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:172412800-172421200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:172412800-172421200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:172413000-172420800	Weak transcription	Aorta	Aorta
6	chr2:172413600-172422400	Weak transcription	Adipose Nuclei	Adipose
7	chr2:172414200-172420000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:172418000-172419800	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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