Variant report

Variant	rs11897766
Chromosome Location	chr2:7586436-7586437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10182182	1.00[EUR][1000 genomes]
rs13399641	1.00[EUR][1000 genomes]
rs13430330	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006240	chr2:7408292-7664557	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535578	chr2:7408292-7664557	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7584600-7588600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:7584800-7588600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr2:7585000-7588400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:7585000-7588600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:7585000-7588600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:7585400-7586600	Enhancers	Primary T cells from cord blood	blood
7	chr2:7586000-7588400	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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